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    GKD17_RS13105 C40 family peptidase [ Phocaeicola dorei ]

    Gene ID: 93447641, updated on 9-Jan-2025

    Summary

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    Gene symbol
    GKD17_RS13105
    Gene description
    C40 family peptidase
    Locus tag
    GKD17_RS13105
    Gene type
    protein coding
    Organism
    Phocaeicola dorei (strain: DSM 17855, nat-host: Homo sapiens, culture-collection: DSM:17855, type-material: type strain of Bacteroides dorei)
    Lineage
    Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola
    Old locus tag
    GKD17_13235
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    Genomic context

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    NZ_CP046176.1Genomic Context describing neighboring genes Neighboring gene M16 family metallopeptidase Neighboring gene DUF5687 family protein Neighboring gene ABC transporter ATP-binding protein Neighboring gene HAD-IA family hydrolase Neighboring gene 50S ribosomal protein L21

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_CP046176.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolutionary lines of cysteine peptidases. Barrett AJ, et al. Biol Chem, 2001 May. PMID 11517925
    2. Evolutionary history, structural features and biochemical diversity of the NlpC/P60 superfamily of enzymes. Anantharaman V, et al. Genome Biol, 2003. PMID 12620121, Free PMC Article
    3. Mobile Type VI secretion system loci of the gut Bacteroidales display extensive intra-ecosystem transfer, multi-species spread and geographical clustering. García-Bayona L, et al. PLoS Genet, 2021 Apr. PMID 33901198, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    C40 family peptidase
    WP_007833537.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_CP046176.1 Reference assembly

      Range
      3123244..3123756
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_007833537.1 MULTISPECIES: C40 family peptidase [Phocaeicola]

      See identical proteins and their annotated locations for WP_007833537.1

      UniProtKB/TrEMBL
      A0A076J9K7, B6VW41, I8W8T3, I8WST0
    Nucleotide Protein
    Heading Accession and Version