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    whrn whirlin [ Strongylocentrotus purpuratus (purple sea urchin) ]

    Gene ID: 588790, updated on 17-Aug-2024

    Summary

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    Symbol
    whrn
    Full Name
    whirlin
    Primary source
    EchinoBase:ECB-GENE-23145448
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Strongylocentrotus purpuratus
    Lineage
    Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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    Genomic context

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    See whrn in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145610.1 (35339833..35363959, complement)
    Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003576991.1 (1346763..1374629)

    NW_022145610.1Genomic Context describing neighboring genes Neighboring gene dimethylaniline monooxygenase [N-oxide-forming] 2 Neighboring gene nuclear receptor subfamily 2 group E member 1 Neighboring gene uncharacterized LOC100894010 Neighboring gene Ski2 like RNA helicase Neighboring gene aminolevulinate dehydratase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cilium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of stereocilia ankle link complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in stereocilium tip IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    whirlin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Spur_5.0 Primary Assembly

    Genomic

    1. NW_022145610.1 Reference Spur_5.0 Primary Assembly

      Range
      35339833..35363959 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011678351.2 → XP_011676653.2  whirlin isoform X2

      UniProtKB/TrEMBL
      A0A7M7HHB4
      Conserved Domains (4) summary
      cd00992
      Location:223 → 305
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      cd07357
      Location:516 → 594
      HN_L-whirlin_R2_like; second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains
      cl11968
      Location:27 → 101
      harmonin_N_like; N-terminal protein-binding module of harmonin and similar domains, also known as HHD (harmonin homology domain)
      cl21589
      Location:785 → 896
      Relaxase; Relaxase/Mobilisation nuclease domain

    2. XM_788456.5 → XP_793549.4  whirlin isoform X1

      UniProtKB/TrEMBL
      A0A7M7RE59
      Conserved Domains (4) summary
      cd00992
      Location:223 → 305
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      cd07357
      Location:516 → 594
      HN_L-whirlin_R2_like; second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains
      cl11968
      Location:27 → 101
      harmonin_N_like; N-terminal protein-binding module of harmonin and similar domains, also known as HHD (harmonin homology domain)
      cl21589
      Location:803 → 907
      Relaxase; Relaxase/Mobilisation nuclease domain
    Nucleotide Protein
    Heading Accession and Version

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