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    LOC102732240 ubiquitin thioesterase ZRANB1 [ Leptonychotes weddellii (Weddell seal) ]

    Gene ID: 102732240, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC102732240
    Gene description
    ubiquitin thioesterase ZRANB1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Leptonychotes weddellii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Leptonychotes
    Also known as
    ZRANB1
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    Genomic context

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    See LOC102732240 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    101 current LepWed1.0 (GCF_000349705.1) Unplaced Scaffold NW_006386166.1 (115414..141973, complement)

    NW_006386166.1Genomic Context describing neighboring genes Neighboring gene C-terminal-binding protein 2 Neighboring gene U4 spliceosomal RNA Neighboring gene dehydrodolichyl diphosphate synthase complex subunit NUS1 pseudogene Neighboring gene BRISC complex subunit Abraxas 2-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006386166 Unplaced Scaffold Reference LepWed1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables K63-linked polyubiquitin modification-dependent protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of Wnt signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K29-linked deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K33-linked deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein deubiquitination involved in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin thioesterase ZRANB1
    Names
    zinc finger RANBP2-type containing 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Leptonychotes weddellii Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference LepWed1.0 Primary Assembly

    Genomic

    1. NW_006386166.1 Reference LepWed1.0 Primary Assembly

      Range
      115414..141973 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031020143.1 → XP_030876003.1  ubiquitin thioesterase ZRANB1 isoform X1

      UniProtKB/TrEMBL
      A0A7F8Q6L7
      Conserved Domains (3) summary
      smart00547
      Location:178 → 201
      ZnF_RBZ; Zinc finger domain
      sd00029
      Location:114 → 133
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam18418
      Location:272 → 367
      AnkUBD; Ankyrin ubiquitin-binding domain

    2. XM_031020144.1 → XP_030876004.1  ubiquitin thioesterase ZRANB1 isoform X2

      UniProtKB/TrEMBL
      A0A7F8Q657
      Conserved Domains (3) summary
      smart00547
      Location:178 → 201
      ZnF_RBZ; Zinc finger domain
      sd00029
      Location:114 → 133
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam18418
      Location:272 → 300
      AnkUBD; Ankyrin ubiquitin-binding domain

    3. XM_031020146.1 → XP_030876006.1  ubiquitin thioesterase ZRANB1 isoform X2

      UniProtKB/TrEMBL
      A0A7F8Q657
      Conserved Domains (3) summary
      smart00547
      Location:178 → 201
      ZnF_RBZ; Zinc finger domain
      sd00029
      Location:114 → 133
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam18418
      Location:272 → 300
      AnkUBD; Ankyrin ubiquitin-binding domain

    4. XM_031020145.1 → XP_030876005.1  ubiquitin thioesterase ZRANB1 isoform X2

      UniProtKB/TrEMBL
      A0A7F8Q657
    Nucleotide Protein
    Heading Accession and Version

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