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    • Showing Current items.

    clec-63 C-type LECtin [ Caenorhabditis elegans ]

    Gene ID: 174927, updated on 9-Dec-2024

    Summary

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    Official Symbol
    clec-63
    Official Full Name
    C-type LECtin
    Primary source
    WormBase:WBGene00009394
    Locus tag
    CELE_F35C5.6
    See related
    AllianceGenome:WB:WBGene00009394
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Is expressed in germ line and intestine. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See clec-63 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    4
    Sequence:
    Chromosome: II; NC_003280.10 (12895638..12897446)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene VWFA domain-containing protein Neighboring gene VWFA domain-containing protein Neighboring gene C-type lectin domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Long-term and low-dose exposure to nanopolystyrene induces a protective strategy to maintain functional state of intestine barrier in nematode Caenorhabditis elegans. Shao H, et al. Environ Pollut, 2020 Mar. PMID 31767235
    2. Studies on Shigella boydii infection in Caenorhabditis elegans and bioinformatics analysis of immune regulatory protein interactions. Kesika P, et al. Biochim Biophys Acta, 2012 Dec. PMID 22841995
    3. Genome-wide investigation reveals pathogen-specific and shared signatures in the response of Caenorhabditis elegans to infection. Wong D, et al. Genome Biol, 2007. PMID 17875205, Free PMC Article
    4. Specificity of the innate immune system and diversity of C-type lectin domain (CTLD) proteins in the nematode Caenorhabditis elegans. Schulenburg H, et al. Immunobiology, 2008. PMID 18406370
    5. Improved Biocompatibility of Amino-Functionalized Graphene Oxide in Caenorhabditis elegans. Rive C, et al. Small, 2019 Nov. PMID 31576668

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    C-type LECtin
    NP_496743.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      12895638..12897446
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_064342.7 → NP_496743.1  C-type LECtin [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_496743.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O45444
      Conserved Domains (2) summary
      smart00034
      Location:253 → 401
      CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
      cl00057
      Location:46 → 233
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    Nucleotide Protein
    Heading Accession and Version

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