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    grl-5 Ground-like domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 178837, updated on 9-Dec-2024

    Summary

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    Official Symbol
    grl-5
    Official Full Name
    Ground-like domain-containing protein
    Primary source
    WormBase:WBGene00001714
    Locus tag
    CELE_Y47D7A.5
    See related
    AllianceGenome:WB:WBGene00001714
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Is expressed in hypodermis and ventral cord blast cell. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See grl-5 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    4
    Sequence:
    Chromosome: V; NC_003283.11 (4412748..4414663, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Nuclear receptor domain-containing protein Neighboring gene NR LBD domain-containing protein Neighboring gene Uncharacterized protein Neighboring gene Extensin Neighboring gene Secreted protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Hedgehog-related genes regulate reactivation of quiescent neural progenitors in Caenorhabditis elegans. Kume M, et al. Biochem Biophys Res Commun, 2019 Dec 10. PMID 31615656
    2. Comprehensive analysis of gene expression patterns of hedgehog-related genes. Hao L, et al. BMC Genomics, 2006 Oct 31. PMID 17076889, Free PMC Article
    3. Evolution of hedgehog and hedgehog-related genes, their origin from Hog proteins in ancestral eukaryotes and discovery of a novel Hint motif. Bürglin TR. BMC Genomics, 2008 Mar 11. PMID 18334026, Free PMC Article
    4. Meta-Analysis of Caenorhabditis elegans Transcriptomics Implicates Hedgehog-Like Signaling in Host-Microbe Interactions. Zárate-Potes A, et al. Front Microbiol, 2022. PMID 35620104, Free PMC Article
    5. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    Ground-like domain-containing protein
    NP_504216.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      4412748..4414663 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_071815.6 → NP_504216.1  Ground-like domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_504216.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9N3V3
      Conserved Domains (1) summary
      pfam04155
      Location:146 → 216
      Ground-like; Ground-like domain
    Nucleotide Protein
    Heading Accession and Version

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