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Links from Protein

    • Showing Current items.

    F53A9.8 Zinc transporter Slc39a7 [ Caenorhabditis elegans ]

    Gene ID: 181118, updated on 9-Dec-2024

    Summary

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    Official Symbol
    F53A9.8
    Official Full Name
    Zinc transporter Slc39a7
    Primary source
    WormBase:WBGene00018731
    Locus tag
    CELE_F53A9.8
    See related
    AllianceGenome:WB:WBGene00018731
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Involved in defense response to Gram-positive bacterium. Is expressed in intestine. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See F53A9.8 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    1
    Sequence:
    Chromosome: X; NC_003284.9 (8718641..8718904, complement)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Spore coat protein Neighboring gene Threonine dehydratase Neighboring gene Uncharacterized protein Neighboring gene Troponin T

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genomic clusters, putative pathogen recognition molecules, and antimicrobial genes are induced by infection of C. elegans with M. nematophilum. O'Rourke D, et al. Genome Res, 2006 Aug. PMID 16809667, Free PMC Article
    2. Innate host defense requires TFEB-mediated transcription of cytoprotective and antimicrobial genes. Visvikis O, et al. Immunity, 2014 Jun 19. PMID 24882217, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in defense response to Gram-positive bacterium IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in defense response to Gram-positive bacterium IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Zinc transporter Slc39a7
    NP_509477.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      8718641..8718904 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_077076.7 → NP_509477.1  Zinc transporter Slc39a7 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_509477.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q20693
    Nucleotide Protein
    Heading Accession and Version

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