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    PLXNB1 plexin B1 [ Geospiza fortis (medium ground-finch) ]

    Gene ID: 102031829, updated on 3-Aug-2024

    Summary

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    Gene symbol
    PLXNB1
    Gene description
    plexin B1
    See related
    Ensembl:ENSGFOG00000008673
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Geospiza fortis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Thraupidae; Geospiza
    Orthologs
    human mouse all
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    Genomic context

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    See PLXNB1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    38
    Annotation release Status Assembly Chr Location
    102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054317.1 (6730059..6785764, complement)

    NW_005054317.1Genomic Context describing neighboring genes Neighboring gene SET domain containing 5 Neighboring gene SRSF protein kinase 3-like Neighboring gene uncharacterized LOC102032163 Neighboring gene coiled-coil domain containing 51

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_005054317 Unplaced Scaffold Reference GeoFor_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables semaphorin receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of axonogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cell shape IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in semaphorin-plexin signaling pathway involved in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of semaphorin receptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    plexin-B1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GeoFor_1.0

    Genomic

    1. NW_005054317.1 Reference GeoFor_1.0

      Range
      6730059..6785764 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014306713.2 → XP_014162188.1  plexin-B1 isoform X1

      UniProtKB/TrEMBL
      A0A6I9Z5B5
      Related
      ENSGFOP00000012595.1, ENSGFOT00000013026.1
      Conserved Domains (8) summary
      cd11275
      Location:27 → 489
      Sema_plexin_B1; The Sema domain, a protein interacting module, of Plexin B1
      PHA03247
      Location:688 → 905
      PHA03247; large tegument protein UL36; Provisional
      cd01180
      Location:1135 → 1226
      IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
      pfam01437
      Location:491 → 540
      PSI; Plexin repeat
      pfam08337
      Location:1626 → 2166
      Plexin_cytopl; Plexin cytoplasmic RasGAP domain
      pfam17960
      Location:550 → 636
      TIG_plexin; TIG domain
      pfam18020
      Location:988 → 1087
      TIG_2; TIG domain found in plexin
      cl15674
      Location:1317 → 1439
      IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...

    2. XM_031056334.1 → XP_030912194.1  plexin-B1 isoform X1

      UniProtKB/TrEMBL
      A0A6I9Z5B5
      Conserved Domains (8) summary
      cd11275
      Location:27 → 489
      Sema_plexin_B1; The Sema domain, a protein interacting module, of Plexin B1
      PHA03247
      Location:688 → 905
      PHA03247; large tegument protein UL36; Provisional
      cd01180
      Location:1135 → 1226
      IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
      pfam01437
      Location:491 → 540
      PSI; Plexin repeat
      pfam08337
      Location:1626 → 2166
      Plexin_cytopl; Plexin cytoplasmic RasGAP domain
      pfam17960
      Location:550 → 636
      TIG_plexin; TIG domain
      pfam18020
      Location:988 → 1087
      TIG_2; TIG domain found in plexin
      cl15674
      Location:1317 → 1439
      IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...

    3. XM_031056335.1 → XP_030912195.1  plexin-B1 isoform X2

      UniProtKB/TrEMBL
      A0A8N5EQL9
      Conserved Domains (8) summary
      cd11275
      Location:27 → 489
      Sema_plexin_B1; The Sema domain, a protein interacting module, of Plexin B1
      PHA03247
      Location:688 → 905
      PHA03247; large tegument protein UL36; Provisional
      cd01180
      Location:1135 → 1226
      IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
      pfam01437
      Location:491 → 540
      PSI; Plexin repeat
      pfam08337
      Location:1626 → 2116
      Plexin_cytopl; Plexin cytoplasmic RasGAP domain
      pfam17960
      Location:550 → 636
      TIG_plexin; TIG domain
      pfam18020
      Location:988 → 1087
      TIG_2; TIG domain found in plexin
      cl15674
      Location:1317 → 1439
      IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
    Nucleotide Protein
    Heading Accession and Version

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