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    Rabgap1 RAB GTPase activating protein 1 [ Mastomys coucha (southern multimammate mouse) ]

    Gene ID: 116090088, updated on 18-Mar-2024

    Summary

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    Gene symbol
    Rabgap1
    Gene description
    RAB GTPase activating protein 1
    See related
    EnsemblRapid:ENSMCUG00000015168
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mastomys coucha
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mastomys
    Orthologs
    human mouse all
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    Genomic context

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    See Rabgap1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    100 current UCSF_Mcou_1 (GCF_008632895.1) Unplaced Scaffold NW_022196897.1 (25186212..25316717)

    NW_022196897.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD90 Neighboring gene ring finger and CCCH-type domains 2 Neighboring gene zinc finger and BTB domain containing 6 Neighboring gene zinc finger and BTB domain containing 26 Neighboring gene G protein-coupled receptor 21 Neighboring gene uncharacterized LOC116090095 Neighboring gene spermatid perinuclear RNA binding protein Neighboring gene uncharacterized LOC116090094

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_022196897 Unplaced Scaffold Reference UCSF_Mcou_1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    rab GTPase-activating protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Mastomys coucha Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCSF_Mcou_1 Primary Assembly

    Genomic

    1. NW_022196897.1 Reference UCSF_Mcou_1 Primary Assembly

      Range
      25186212..25316717
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031370054.1 → XP_031225914.1  rab GTPase-activating protein 1 isoform X1

      Conserved Domains (4) summary
      smart00164
      Location:540 → 749
      TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
      cd01211
      Location:122 → 250
      PTB_Rab6GAP; GTPase activating protein for Rab 6 Phosphotyrosine-binding (PTB) domain
      pfam00769
      Location:771 → 997
      ERM; Ezrin/radixin/moesin family
      pfam12473
      Location:284 → 414
      DUF3694; Kinesin protein

    2. XM_031370056.1 → XP_031225916.1  rab GTPase-activating protein 1 isoform X2

      Related
      ENSMCUP00000017022.1, ENSMCUT00000022109.1
      Conserved Domains (4) summary
      smart00164
      Location:558 → 767
      TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
      cd01211
      Location:140 → 268
      PTB_Rab6GAP; GTPase activating protein for Rab 6 Phosphotyrosine-binding (PTB) domain
      pfam00769
      Location:789 → 1015
      ERM; Ezrin/radixin/moesin family
      pfam12473
      Location:302 → 432
      DUF3694; Kinesin protein

    3. XM_031370055.1 → XP_031225915.1  rab GTPase-activating protein 1 isoform X2

      Conserved Domains (4) summary
      smart00164
      Location:558 → 767
      TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
      cd01211
      Location:140 → 268
      PTB_Rab6GAP; GTPase activating protein for Rab 6 Phosphotyrosine-binding (PTB) domain
      pfam00769
      Location:789 → 1015
      ERM; Ezrin/radixin/moesin family
      pfam12473
      Location:302 → 432
      DUF3694; Kinesin protein

    4. XM_031370057.1 → XP_031225917.1  rab GTPase-activating protein 1 isoform X3

    5. XM_031370059.1 → XP_031225919.1  rab GTPase-activating protein 1 isoform X4

      Conserved Domains (3) summary
      smart00164
      Location:194 → 403
      TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
      TIGR02168
      Location:442 → 663
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam12473
      Location:3 → 68
      DUF3694; Kinesin protein

    6. XM_031370060.1 → XP_031225920.1  rab GTPase-activating protein 1 isoform X5

      Conserved Domains (2) summary
      TIGR02168
      Location:220 → 441
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam00566
      Location:13 → 181
      RabGAP-TBC; Rab-GTPase-TBC domain
    Nucleotide Protein
    Heading Accession and Version

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