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    Zranb1 zinc finger RANBP2-type containing 1 [ Mastomys coucha (southern multimammate mouse) ]

    Gene ID: 116103112, updated on 18-Mar-2024

    Summary

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    Gene symbol
    Zranb1
    Gene description
    zinc finger RANBP2-type containing 1
    See related
    EnsemblRapid:ENSMCUG00000020260
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mastomys coucha
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mastomys
    Orthologs
    human mouse all
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    Genomic context

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    See Zranb1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current UCSF_Mcou_1 (GCF_008632895.1) Unplaced Scaffold NW_022196904.1 (122052836..122115609)

    NW_022196904.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 53 member B Neighboring gene EEF1A lysine methyltransferase 2 Neighboring gene uncharacterized LOC116103114 Neighboring gene abraxas 2, BRISC complex subunit Neighboring gene uncharacterized LOC116103115 Neighboring gene C-terminal binding protein 2 Neighboring gene small nucleolar RNA SNORD124

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_022196904 Unplaced Scaffold Reference UCSF_Mcou_1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables K63-linked polyubiquitin modification-dependent protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of Wnt signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K29-linked deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K33-linked deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein deubiquitination involved in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin thioesterase ZRANB1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Mastomys coucha Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCSF_Mcou_1 Primary Assembly

    Genomic

    1. NW_022196904.1 Reference UCSF_Mcou_1 Primary Assembly

      Range
      122052836..122115609
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031388604.1 → XP_031244464.1  ubiquitin thioesterase ZRANB1 isoform X1

      Related
      ENSMCUP00000022879.1, ENSMCUT00000029609.1
      Conserved Domains (4) summary
      smart00547
      Location:178 → 201
      ZnF_RBZ; Zinc finger domain
      sd00029
      Location:114 → 133
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam02338
      Location:464 → 612
      OTU; OTU-like cysteine protease
      pfam18418
      Location:272 → 367
      AnkUBD; Ankyrin ubiquitin-binding domain

    2. XM_031388607.1 → XP_031244467.1  ubiquitin thioesterase ZRANB1 isoform X2

      Related
      ENSMCUP00000022877.1, ENSMCUT00000029606.1
      Conserved Domains (4) summary
      smart00547
      Location:152 → 175
      ZnF_RBZ; Zinc finger domain
      sd00029
      Location:88 → 107
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam02338
      Location:438 → 586
      OTU; OTU-like cysteine protease
      pfam18418
      Location:246 → 341
      AnkUBD; Ankyrin ubiquitin-binding domain

    3. XM_031388606.1 → XP_031244466.1  ubiquitin thioesterase ZRANB1 isoform X1

      Conserved Domains (4) summary
      smart00547
      Location:178 → 201
      ZnF_RBZ; Zinc finger domain
      sd00029
      Location:114 → 133
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam02338
      Location:464 → 612
      OTU; OTU-like cysteine protease
      pfam18418
      Location:272 → 367
      AnkUBD; Ankyrin ubiquitin-binding domain

    4. XM_031388608.1 → XP_031244468.1  ubiquitin thioesterase ZRANB1 isoform X2

      Conserved Domains (4) summary
      smart00547
      Location:152 → 175
      ZnF_RBZ; Zinc finger domain
      sd00029
      Location:88 → 107
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam02338
      Location:438 → 586
      OTU; OTU-like cysteine protease
      pfam18418
      Location:246 → 341
      AnkUBD; Ankyrin ubiquitin-binding domain
    Nucleotide Protein
    Heading Accession and Version

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