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    PLXNB1 plexin B1 [ Lonchura striata (white-rumped munia) ]

    Gene ID: 110471136, updated on 2-Oct-2024

    Summary

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    Gene symbol
    PLXNB1
    Gene description
    plexin B1
    Locus tag
    RLOC_00009699
    See related
    Ensembl:ENSLSDG00000009628
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lonchura striata
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Lonchura
    Also known as
    Plexin-B1
    Orthologs
    human mouse all
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    Genomic context

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    See PLXNB1 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    38
    Annotation release Status Assembly Chr Location
    RS_2024_09 current lonStrDom2 (GCF_005870125.1) 12 NC_042578.1 (11435461..11509419)

    Chromosome 12 - NC_042578.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110471388 Neighboring gene coiled-coil domain containing 51 Neighboring gene uncharacterized LOC110471397 Neighboring gene SET domain containing 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_042578.1 Chromosome 12 Reference lonStrDom2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables semaphorin receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in semaphorin-plexin signaling pathway involved in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of semaphorin receptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    plexin-B1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_005870125.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference lonStrDom2 Primary Assembly

    Genomic

    1. NC_042578.1 Reference lonStrDom2 Primary Assembly

      Range
      11435461..11509419
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021531427.2 → XP_021387102.1  plexin-B1 isoform X1

      UniProtKB/TrEMBL
      A0A218VCJ9
      Related
      ENSLSDP00000013229.1
      Conserved Domains (8) summary
      cd11275
      Location:27 → 489
      Sema_plexin_B1; The Sema domain, a protein interacting module, of Plexin B1
      PHA03247
      Location:687 → 905
      PHA03247; large tegument protein UL36; Provisional
      cd01180
      Location:1139 → 1230
      IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
      pfam01437
      Location:491 → 540
      PSI; Plexin repeat
      pfam08337
      Location:1630 → 2170
      Plexin_cytopl; Plexin cytoplasmic RasGAP domain
      pfam17960
      Location:550 → 636
      TIG_plexin; TIG domain
      pfam18020
      Location:992 → 1091
      TIG_2; TIG domain found in plexin
      cl15674
      Location:1321 → 1443
      IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...

    2. XM_021531432.2 → XP_021387107.1  plexin-B1 isoform X1

      UniProtKB/TrEMBL
      A0A218VCJ9
      Conserved Domains (8) summary
      cd11275
      Location:27 → 489
      Sema_plexin_B1; The Sema domain, a protein interacting module, of Plexin B1
      PHA03247
      Location:687 → 905
      PHA03247; large tegument protein UL36; Provisional
      cd01180
      Location:1139 → 1230
      IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
      pfam01437
      Location:491 → 540
      PSI; Plexin repeat
      pfam08337
      Location:1630 → 2170
      Plexin_cytopl; Plexin cytoplasmic RasGAP domain
      pfam17960
      Location:550 → 636
      TIG_plexin; TIG domain
      pfam18020
      Location:992 → 1091
      TIG_2; TIG domain found in plexin
      cl15674
      Location:1321 → 1443
      IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...

    3. XM_031505996.1 → XP_031361856.1  plexin-B1 isoform X2

      Conserved Domains (8) summary
      cd11275
      Location:27 → 489
      Sema_plexin_B1; The Sema domain, a protein interacting module, of Plexin B1
      PHA03247
      Location:687 → 905
      PHA03247; large tegument protein UL36; Provisional
      cd01180
      Location:1139 → 1230
      IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
      pfam01437
      Location:491 → 540
      PSI; Plexin repeat
      pfam08337
      Location:1630 → 2120
      Plexin_cytopl; Plexin cytoplasmic RasGAP domain
      pfam17960
      Location:550 → 636
      TIG_plexin; TIG domain
      pfam18020
      Location:992 → 1091
      TIG_2; TIG domain found in plexin
      cl15674
      Location:1321 → 1443
      IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...

    4. XM_021531442.2 → XP_021387117.1  plexin-B1 isoform X1

      UniProtKB/TrEMBL
      A0A218VCJ9
      Conserved Domains (8) summary
      cd11275
      Location:27 → 489
      Sema_plexin_B1; The Sema domain, a protein interacting module, of Plexin B1
      PHA03247
      Location:687 → 905
      PHA03247; large tegument protein UL36; Provisional
      cd01180
      Location:1139 → 1230
      IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
      pfam01437
      Location:491 → 540
      PSI; Plexin repeat
      pfam08337
      Location:1630 → 2170
      Plexin_cytopl; Plexin cytoplasmic RasGAP domain
      pfam17960
      Location:550 → 636
      TIG_plexin; TIG domain
      pfam18020
      Location:992 → 1091
      TIG_2; TIG domain found in plexin
      cl15674
      Location:1321 → 1443
      IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
    Nucleotide Protein
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