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    LOC101208670 sm-like protein LSM5 [ Cucumis sativus (cucumber) ]

    Gene ID: 101208670, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC101208670
    Gene description
    sm-like protein LSM5
    Locus tag
    Csa_017513
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC101208670 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current Cucumber_9930_V3 (GCF_000004075.3) 3 NC_026657.2 (25411683..25424434)
    101 previous assembly ASM407v2 (GCF_000004075.2) 3 NC_026657.1 (24280136..24292854)

    Chromosome 3 - NC_026657.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116402557 Neighboring gene protein FAM98A Neighboring gene uncharacterized LOC116402783 Neighboring gene pentatricopeptide repeat-containing protein At2g15820, chloroplastic Neighboring gene protein FAM98A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Lsm1-7-Pat1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U4/U6 x U5 tri-snRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U6 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sm-like protein LSM5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cucumber_9930_V3 Primary Assembly

    Genomic

    1. NC_026657.2 Reference Cucumber_9930_V3 Primary Assembly

      Range
      25411683..25424434
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004151972.3 → XP_004152020.2  sm-like protein LSM5

      Conserved Domains (1) summary
      cd01732
      Location:69 → 144
      LSm5; Like-Sm protein 5
    Nucleotide Protein
    Heading Accession and Version

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