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    LOC109899985 histone acetyltransferase p300-like [ Oncorhynchus kisutch (coho salmon) ]

    Gene ID: 109899985, updated on 25-Jan-2024

    Summary

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    Gene symbol
    LOC109899985
    Gene description
    histone acetyltransferase p300-like
    See related
    Ensembl:ENSOKIG00005005140
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oncorhynchus kisutch
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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    Genomic context

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    See LOC109899985 in Genome Data Viewer
    Location:
    chromosome: LG11
    Exon count:
    29
    Annotation release Status Assembly LG Location
    101 current Okis_V2 (GCF_002021735.2) LG11 NC_034184.2 (13544666..13566603)
    100 previous assembly Okis_V1 (GCF_002021735.1) LG11 NC_034184.1 (66291678..66313194, complement)

    Linkage Group LG11 - NC_034184.2Genomic Context describing neighboring genes Neighboring gene chondroadherin-like b Neighboring gene L3MBTL histone methyl-lysine binding protein 2 Neighboring gene chromobox protein homolog 7 Neighboring gene Josephin domain containing 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone acetyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histone acetyltransferase p300-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Okis_V2 Primary Assembly

    Genomic

    1. NC_034184.2 Reference Okis_V2 Primary Assembly

      Range
      13544666..13566603
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031835330.1 → XP_031691190.1  histone acetyltransferase p300-like isoform X1

      UniProtKB/TrEMBL
      A0A8C7D3M6
      Conserved Domains (11) summary
      cd05495
      Location:1067 → 1173
      Bromo_cbp_like; Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to ...
      smart00551
      Location:1756 → 1834
      ZnF_TAZ; TAZ zinc finger, present in p300 and CBP
      PHA03247
      Location:656 → 960
      PHA03247; large tegument protein UL36; Provisional
      cd02337
      Location:1695 → 1735
      ZZ_CBP; Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that ...
      cd15802
      Location:1186 → 1268
      RING_CBP-p300; atypical RING domain found in CREB-binding protein and p300 histone acetyltransferases
      pfam09606
      Location:1982 → 2175
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam02135
      Location:346 → 413
      zf-TAZ; TAZ zinc finger
      pfam02172
      Location:564 → 644
      KIX; KIX domain
      pfam08214
      Location:1332 → 1543
      HAT_KAT11; Histone acetylation protein
      pfam09030
      Location:2233 → 2283
      Creb_binding; Creb binding
      cl22851
      Location:1269 → 1303
      PHD_SF; PHD finger superfamily

    2. XM_020495676.2 → XP_020351265.2  histone acetyltransferase p300-like isoform X3

      UniProtKB/TrEMBL
      A0A8C7D3M6
      Related
      ENSOKIP00005014990.1, ENSOKIT00005015944.1
      Conserved Domains (11) summary
      cd05495
      Location:1067 → 1173
      Bromo_cbp_like; Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to ...
      smart00551
      Location:1746 → 1824
      ZnF_TAZ; TAZ zinc finger, present in p300 and CBP
      PHA03247
      Location:656 → 960
      PHA03247; large tegument protein UL36; Provisional
      cd02337
      Location:1685 → 1725
      ZZ_CBP; Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that ...
      cd15802
      Location:1186 → 1258
      RING_CBP-p300; atypical RING domain found in CREB-binding protein and p300 histone acetyltransferases
      pfam09606
      Location:1972 → 2165
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam02135
      Location:346 → 413
      zf-TAZ; TAZ zinc finger
      pfam02172
      Location:564 → 644
      KIX; KIX domain
      pfam08214
      Location:1322 → 1533
      HAT_KAT11; Histone acetylation protein
      pfam09030
      Location:2223 → 2273
      Creb_binding; Creb binding
      cl22851
      Location:1259 → 1293
      PHD_SF; PHD finger superfamily

    3. XM_031835331.1 → XP_031691191.1  histone acetyltransferase p300-like isoform X2

      UniProtKB/TrEMBL
      A0A8C7D3M6, A0A8C7D6V1
      Related
      ENSOKIP00005014740.1, ENSOKIT00005015689.1
      Conserved Domains (11) summary
      cd05495
      Location:1064 → 1170
      Bromo_cbp_like; Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to ...
      smart00551
      Location:1753 → 1831
      ZnF_TAZ; TAZ zinc finger, present in p300 and CBP
      PHA03247
      Location:656 → 957
      PHA03247; large tegument protein UL36; Provisional
      cd02337
      Location:1692 → 1732
      ZZ_CBP; Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that ...
      cd15802
      Location:1183 → 1265
      RING_CBP-p300; atypical RING domain found in CREB-binding protein and p300 histone acetyltransferases
      pfam09606
      Location:1979 → 2172
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam02135
      Location:346 → 413
      zf-TAZ; TAZ zinc finger
      pfam02172
      Location:564 → 644
      KIX; KIX domain
      pfam08214
      Location:1329 → 1540
      HAT_KAT11; Histone acetylation protein
      pfam09030
      Location:2230 → 2280
      Creb_binding; Creb binding
      cl22851
      Location:1266 → 1300
      PHD_SF; PHD finger superfamily

    4. XM_031835332.1 → XP_031691192.1  histone acetyltransferase p300-like isoform X4

      UniProtKB/TrEMBL
      A0A8C7D3M6
      Related
      ENSOKIP00005014834.1, ENSOKIT00005015787.1
      Conserved Domains (11) summary
      cd05495
      Location:1064 → 1170
      Bromo_cbp_like; Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to ...
      smart00551
      Location:1743 → 1821
      ZnF_TAZ; TAZ zinc finger, present in p300 and CBP
      PHA03247
      Location:656 → 957
      PHA03247; large tegument protein UL36; Provisional
      cd02337
      Location:1682 → 1722
      ZZ_CBP; Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that ...
      cd15802
      Location:1183 → 1255
      RING_CBP-p300; atypical RING domain found in CREB-binding protein and p300 histone acetyltransferases
      pfam09606
      Location:1969 → 2162
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam02135
      Location:346 → 413
      zf-TAZ; TAZ zinc finger
      pfam02172
      Location:564 → 644
      KIX; KIX domain
      pfam08214
      Location:1319 → 1530
      HAT_KAT11; Histone acetylation protein
      pfam09030
      Location:2220 → 2270
      Creb_binding; Creb binding
      cl22851
      Location:1256 → 1290
      PHD_SF; PHD finger superfamily
    Nucleotide Protein
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