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    ydhR putative monooxygenase YdhR [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946177, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ydhR
    Official Full Name
    putative monooxygenase YdhR
    Primary source
    ECOCYC:G6895
    Locus tag
    b1667
    See related
    ASAP:ABE-0005572
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1663
    Summary
    YdhR is structurally similar to YgiN and the ActVA-Orf6 hydroxyquinone monooxygenase. [More information is available at EcoGene: EG13952]. A solution structure of YdhR has been determined; the protein belongs to the / barrel superfamily of proteins. [More information is available at EcoCyc: G6895].
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    Genomic context

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    Sequence:
    NC_000913.3 (1746700..1747005)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene tRNA-Val Neighboring gene tRNA-Val Neighboring gene FAD/NAD(P) binding domain-containing protein YdhS Neighboring gene uncharacterized protein YdhT

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Solution structure of the Escherichia coli protein ydhR: a putative mono-oxygenase. Revington M, et al. Protein Sci, 2005 Dec. PMID 16260765, Free PMC Article
    2. Enrichment of low abundance proteins of Escherichia coli by hydroxyapatite chromatography. Fountoulakis M, et al. Electrophoresis, 1999 Aug. PMID 10493123
    3. Localization, annotation, and comparison of the Escherichia coli K-12 proteome under two states of growth. Lopez-Campistrous A, et al. Mol Cell Proteomics, 2005 Aug. PMID 15911532
    4. Interaction network containing conserved and essential protein complexes in Escherichia coli. Butland G, et al. Nature, 2005 Feb 3. PMID 15690043
    5. Protein abundance profiling of the Escherichia coli cytosol. Ishihama Y, et al. BMC Genomics, 2008 Feb 27. PMID 18304323, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. ydhR likely belongs to a recently identified group of mono-oxygenase proteins
      Title: Solution structure of the Escherichia coli protein ydhR: a putative mono-oxygenase.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein homodimerization activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative monooxygenase YdhR

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1746700..1747005
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416182.1 putative monooxygenase YdhR [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416182.1

      Status: PROVISIONAL

      Conserved Domains (1) summary
      PRK11118
      Location:1 → 100
      PRK11118; putative monooxygenase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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