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    Agenet and bromo-adjacent homology (BAH) domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835654, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Agenet and bromo-adjacent homology (BAH) domain-containing protein
    Primary source
    TAIR:AT5G55600
    Locus tag
    AT5G55600
    See related
    Araport:AT5G55600
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MDF20.4; MDF20_4
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (22521843..22525685, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene defensin-like protein Neighboring gene uncharacterized protein Neighboring gene Mitochondrial transcription termination factor family protein Neighboring gene Pectin lyase-like superfamily protein Neighboring gene isopentenyl-diphosphate delta-isomerase Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001125971.2
    NM_001203618.1
    NM_124942.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Agenet and bromo-adjacent homology (BAH) domain-containing protein
    NP_001119443.1
    • agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein; FUNCTIONS IN: RNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Bromo adjacent homology (BAH) domain (InterPro:IPR001025); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT1G68580.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001190547.1
    • agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein; FUNCTIONS IN: RNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Bromo adjacent homology (BAH) domain (InterPro:IPR001025); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT1G68580.2).
    NP_200371.2
    • agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein; FUNCTIONS IN: RNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Bromo adjacent homology (BAH) domain (InterPro:IPR001025); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT1G68580.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      22521843..22525685 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001125971.2 → NP_001119443.1  Agenet and bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119443.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654GBS4, Q0WQ11, Q8W109
      Conserved Domains (3) summary
      smart00743
      Location:467 → 524
      Agenet; Tudor-like domain present in plant sequences
      cd04721
      Location:162 → 291
      BAH_plant_1; BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these ...
      pfam05641
      Location:386 → 458
      Agenet; Agenet domain

    2. NM_124942.3 → NP_200371.2  Agenet and bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200371.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654GBS4, Q0WQ11, Q8W109
      Conserved Domains (3) summary
      smart00743
      Location:467 → 524
      Agenet; Tudor-like domain present in plant sequences
      cd04721
      Location:162 → 291
      BAH_plant_1; BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these ...
      pfam05641
      Location:386 → 458
      Agenet; Agenet domain

    3. NM_001203618.1 → NP_001190547.1  Agenet and bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190547.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654GBS4, Q0WQ11, Q8W109
      Conserved Domains (3) summary
      smart00743
      Location:467 → 524
      Agenet; Tudor-like domain present in plant sequences
      cd04721
      Location:162 → 291
      BAH_plant_1; BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these ...
      pfam05641
      Location:386 → 458
      Agenet; Agenet domain
    Nucleotide Protein
    Heading Accession and Version

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