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    hofQ DNA utilization protein HofQ [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947901, updated on 3-Dec-2024

    Summary

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    Official Symbol
    hofQ
    Official Full Name
    DNA utilization protein HofQ
    Primary source
    ECOCYC:EG12113
    Locus tag
    b3391
    See related
    ASAP:ABE-0011071
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3378; hopQ
    Summary
    hofQ is a homologue of the H. influenzae competence gene comE. [More information is available at EcoCyc: EG12113].
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    Genomic context

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    Sequence:
    NC_000913.3 (3519465..3520703, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene 3-dehydroquinate synthase Neighboring gene shikimate kinase 1 Neighboring gene DNA utilization protein HofP Neighboring gene DNA utilization protein HofO Neighboring gene DNA utilization protein HofN Neighboring gene DNA utilization protein HofM

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of pilQ, a new gene required for the biogenesis of type 4 fimbriae in Pseudomonas aeruginosa. Martin PR, et al. Mol Microbiol, 1993 Aug. PMID 7901733
    2. Transforming DNA uptake gene orthologs do not mediate spontaneous plasmid transformation in Escherichia coli. Sun D, et al. J Bacteriol, 2009 Feb. PMID 19011021, Free PMC Article
    3. PpdD type IV pilin of Escherichia coli K-12 can Be assembled into pili in Pseudomonas aeruginosa. Sauvonnet N, et al. J Bacteriol, 2000 Feb. PMID 10633126, Free PMC Article
    4. DNA as a nutrient: novel role for bacterial competence gene homologs. Finkel SE, et al. J Bacteriol, 2001 Nov. PMID 11591672, Free PMC Article
    5. Escherichia coli competence gene homologs are essential for competitive fitness and the use of DNA as a nutrient. Palchevskiy V, et al. J Bacteriol, 2006 Jun. PMID 16707682, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within carbon utilization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in protein secretion IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cell outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    DNA utilization protein HofQ

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3519465..3520703 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417850.1 DNA utilization protein HofQ [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417850.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8S7TJ86
      Conserved Domains (1) summary
      PRK10560
      Location:27 → 412
      hofQ; outer membrane porin HofQ; Provisional
    Nucleotide Protein
    Heading Accession and Version

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