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    TMEM37 transmembrane protein 37 [ Homo sapiens (human) ]

    Gene ID: 140738, updated on 27-Nov-2024

    Summary

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    Official Symbol
    TMEM37provided by HGNC
    Official Full Name
    transmembrane protein 37provided by HGNC
    Primary source
    HGNC:HGNC:18216
    See related
    Ensembl:ENSG00000171227 MIM:618831; AllianceGenome:HGNC:18216
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    PR; PR1
    Summary
    Predicted to enable calcium channel activity and voltage-gated monoatomic ion channel activity. Predicted to be involved in calcium ion transmembrane transport. Predicted to be located in membrane. Predicted to be part of monoatomic ion channel complex. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in kidney (RPKM 36.6), fat (RPKM 26.3) and 17 other tissues See more
    Orthologs
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    Genomic context

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    See TMEM37 in Genome Data Viewer
    Location:
    2q14.2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (119429895..119438504)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (119863369..119871962)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (120189430..120196080)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene STEAP3 metalloreductase Neighboring gene uncharacterized LOC105373581 Neighboring gene NANOG hESC enhancer GRCh37_chr2:120049626-120050127 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:120051788-120052288 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:120052289-120052789 Neighboring gene NANOG hESC enhancer GRCh37_chr2:120064909-120065410 Neighboring gene chromosome 2 open reading frame 76 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11903 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16447 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16448 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16449 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11904 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16450 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16451 Neighboring gene diazepam binding inhibitor, acyl-CoA binding protein Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11905 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:120189865-120190371 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:120231245-120231796 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:120232347-120232897 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:120238515-120239026 Neighboring gene VISTA enhancer hs1941 Neighboring gene secretin receptor Neighboring gene SCTR antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11906 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16452 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11907 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11908 Neighboring gene cilia and flagella associated protein 221 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11909 Neighboring gene MPRA-validated peak3833 silencer

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. A family of gamma-like calcium channel subunits. Klugbauer N, et al. FEBS Lett, 2000 Mar 24. PMID 10734232
    2. Calcium channel gamma subunits provide insights into the evolution of this gene family. Chu PJ, et al. Gene, 2001 Dec 12. PMID 11738816
    3. The global gene-expression profiles of U-937 human macrophages treated with Tat peptide and Tat-FITC conjugate. Lin CW, et al. J Drug Target, 2012 Jul. PMID 22632162
    4. High-throughput analyses of hnRNP H1 dissects its multi-functional aspect. Uren PJ, et al. RNA Biol, 2016. PMID 26760575, Free PMC Article
    5. Toward an understanding of the protein interaction network of the human liver. Wang J, et al. Mol Syst Biol, 2011 Oct 11. PMID 21988832, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    HIV-1 interactions

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    Protein interactions

    Protein Gene Interaction Pubs
    Tat tat HIV-1 Tat 47-59 peptide downregulates gene expression of transmembrane protein 37 (TMEM37) in U-937 macrophages PubMed

    Go to the HIV-1, Human Interaction Database

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables calcium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables voltage-gated monoatomic ion channel activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in calcium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of monoatomic ion channel complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    voltage-dependent calcium channel gamma-like subunit
    Names
    neuronal voltage-gated calcium channel gamma-like subunit
    voltage-dependent calcium channel gamma subunit-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_183240.3 → NP_899063.2  voltage-dependent calcium channel gamma-like subunit

      See identical proteins and their annotated locations for NP_899063.2

      Status: VALIDATED

      Source sequence(s)
      AC013275, DR003856, DR005637
      Consensus CDS
      CCDS33281.1
      UniProtKB/Swiss-Prot
      Q8WXS4
      Related
      ENSP00000303148.4, ENST00000306406.5
      Conserved Domains (1) summary
      pfam15108
      Location:8 → 187
      TMEM37; Voltage-dependent calcium channel gamma-like subunit protein family

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      119429895..119438504
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011510659.3 → XP_011508961.1  voltage-dependent calcium channel gamma-like subunit isoform X1

      UniProtKB/TrEMBL
      E7EMC0
      Related
      ENSP00000387015.1, ENST00000409826.1
      Conserved Domains (1) summary
      pfam15108
      Location:20 → 199
      TMEM37; Voltage-dependent calcium channel gamma-like subunit protein family

    2. XM_047443445.1 → XP_047299401.1  voltage-dependent calcium channel gamma-like subunit isoform X2

      UniProtKB/TrEMBL
      Q86SV2

    3. XM_006712300.4 → XP_006712363.1  voltage-dependent calcium channel gamma-like subunit isoform X2

      See identical proteins and their annotated locations for XP_006712363.1

      UniProtKB/TrEMBL
      Q86SV2
      Conserved Domains (1) summary
      pfam15108
      Location:1 → 100
      TMEM37; Voltage-dependent calcium channel gamma-like subunit protein family

    4. XM_047443446.1 → XP_047299402.1  voltage-dependent calcium channel gamma-like subunit isoform X2

      UniProtKB/TrEMBL
      Q86SV2

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      119863369..119871962
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054340635.1 → XP_054196610.1  voltage-dependent calcium channel gamma-like subunit isoform X1

      UniProtKB/TrEMBL
      E7EMC0

    2. XM_054340636.1 → XP_054196611.1  voltage-dependent calcium channel gamma-like subunit isoform X2

      UniProtKB/TrEMBL
      Q86SV2

    3. XM_054340637.1 → XP_054196612.1  voltage-dependent calcium channel gamma-like subunit isoform X2

      UniProtKB/TrEMBL
      Q86SV2

    4. XM_054340638.1 → XP_054196613.1  voltage-dependent calcium channel gamma-like subunit isoform X2

      UniProtKB/TrEMBL
      Q86SV2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8WXS4.2 GenPept UniProtKB/Swiss-Prot:Q8WXS4

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