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    LOC116530822 spectrin beta chain, non-erythrocytic 4-like [ Sapajus apella (tufted capuchin) ]

    Gene ID: 116530822, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC116530822
    Gene description
    spectrin beta chain, non-erythrocytic 4-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sapajus apella
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Cebinae; Sapajus
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    Genomic context

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    See LOC116530822 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    100 current GSC_monkey_1.0 (GCF_009761245.1) Unplaced Scaffold NW_022437008.1 (1543352..1603447, complement)

    NW_022437008.1Genomic Context describing neighboring genes Neighboring gene spectrin beta chain, non-erythrocytic 1-like Neighboring gene spectrin beta chain, non-erythrocytic 4-like Neighboring gene biliverdin reductase B Neighboring gene SERTA domain containing 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_022437008 Unplaced Scaffold Reference GSC_monkey_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cell projection IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cortical actin cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    spectrin beta chain, non-erythrocytic 4-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sapajus apella Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GSC_monkey_1.0

    Genomic

    1. NW_022437008.1 Reference GSC_monkey_1.0

      Range
      1543352..1603447 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032249205.1 → XP_032105096.1  spectrin beta chain, non-erythrocytic 4-like

      UniProtKB/TrEMBL
      A0A6J3FHL3
      Conserved Domains (3) summary
      cd00176
      Location:368 → 582
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cd21322
      Location:103 → 232
      CH_SPTBN4_rpt2; second calponin homology (CH) domain found in spectrin beta chain, non-erythrocytic 4 (SPTBN4) and similar proteins
      cl02488
      Location:249 → 357
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    Nucleotide Protein
    Heading Accession and Version

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