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    TNRC6B trinucleotide repeat containing adaptor 6B [ Phoca vitulina (harbor seal) ]

    Gene ID: 116639792, updated on 18-Mar-2024

    Summary

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    Gene symbol
    TNRC6B
    Gene description
    trinucleotide repeat containing adaptor 6B
    See related
    EnsemblRapid:ENSPVHG00000018408
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Phoca vitulina
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Phoca
    Orthologs
    human mouse all
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    Genomic context

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    See TNRC6B in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    100 current GSC_HSeal_1.0 (GCF_004348235.1) Unplaced Scaffold NW_022589722.1 (26270215..26518986)

    NW_022589722.1Genomic Context describing neighboring genes Neighboring gene GRB2 related adaptor protein 2 Neighboring gene 40S ribosomal protein S23-like Neighboring gene family with sequence similarity 83 member F Neighboring gene adenylosuccinate lyase Neighboring gene small G protein signaling modulator 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_022589722 Unplaced Scaffold Reference GSC_HSeal_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in miRNA-mediated post-transcriptional gene silencing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of nuclear-transcribed mRNA poly(A) tail shortening IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in P-body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    trinucleotide repeat-containing gene 6B protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Phoca vitulina Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GSC_HSeal_1.0 Primary Assembly

    Genomic

    1. NW_022589722.1 Reference GSC_HSeal_1.0 Primary Assembly

      Range
      26270215..26518986
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032416409.1 → XP_032272300.1  trinucleotide repeat-containing gene 6B protein isoform X1

      Conserved Domains (4) summary
      pfam10427
      Location:955 → 1098
      Ago_hook; Argonaute hook
      pfam16608
      Location:1391 → 1675
      TNRC6-PABC_bdg; TNRC6-PABC binding domain
      cd12712
      Location:1677 → 1759
      RRM_TNRC6B; RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B)
      NF033849
      Location:366 → 625
      ser_rich_anae_1; serine-rich protein

    2. XM_032416415.1 → XP_032272306.1  trinucleotide repeat-containing gene 6B protein isoform X4

      Conserved Domains (4) summary
      pfam10427
      Location:955 → 1098
      Ago_hook; Argonaute hook
      pfam16608
      Location:1334 → 1618
      TNRC6-PABC_bdg; TNRC6-PABC binding domain
      cd12712
      Location:1620 → 1702
      RRM_TNRC6B; RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B)
      NF033849
      Location:366 → 625
      ser_rich_anae_1; serine-rich protein

    3. XM_032416416.1 → XP_032272307.1  trinucleotide repeat-containing gene 6B protein isoform X1

      Conserved Domains (4) summary
      pfam10427
      Location:955 → 1098
      Ago_hook; Argonaute hook
      pfam16608
      Location:1391 → 1675
      TNRC6-PABC_bdg; TNRC6-PABC binding domain
      cd12712
      Location:1677 → 1759
      RRM_TNRC6B; RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B)
      NF033849
      Location:366 → 625
      ser_rich_anae_1; serine-rich protein

    4. XM_032416412.1 → XP_032272303.1  trinucleotide repeat-containing gene 6B protein isoform X1

      Conserved Domains (4) summary
      pfam10427
      Location:955 → 1098
      Ago_hook; Argonaute hook
      pfam16608
      Location:1391 → 1675
      TNRC6-PABC_bdg; TNRC6-PABC binding domain
      cd12712
      Location:1677 → 1759
      RRM_TNRC6B; RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B)
      NF033849
      Location:366 → 625
      ser_rich_anae_1; serine-rich protein

    5. XM_032416411.1 → XP_032272302.1  trinucleotide repeat-containing gene 6B protein isoform X1

      Conserved Domains (4) summary
      pfam10427
      Location:955 → 1098
      Ago_hook; Argonaute hook
      pfam16608
      Location:1391 → 1675
      TNRC6-PABC_bdg; TNRC6-PABC binding domain
      cd12712
      Location:1677 → 1759
      RRM_TNRC6B; RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B)
      NF033849
      Location:366 → 625
      ser_rich_anae_1; serine-rich protein

    6. XM_032416410.1 → XP_032272301.1  trinucleotide repeat-containing gene 6B protein isoform X1

      Conserved Domains (4) summary
      pfam10427
      Location:955 → 1098
      Ago_hook; Argonaute hook
      pfam16608
      Location:1391 → 1675
      TNRC6-PABC_bdg; TNRC6-PABC binding domain
      cd12712
      Location:1677 → 1759
      RRM_TNRC6B; RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B)
      NF033849
      Location:366 → 625
      ser_rich_anae_1; serine-rich protein

    7. XM_032416413.1 → XP_032272304.1  trinucleotide repeat-containing gene 6B protein isoform X2

      Conserved Domains (4) summary
      pfam10427
      Location:942 → 1085
      Ago_hook; Argonaute hook
      pfam16608
      Location:1378 → 1662
      TNRC6-PABC_bdg; TNRC6-PABC binding domain
      cd12712
      Location:1664 → 1746
      RRM_TNRC6B; RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B)
      NF033849
      Location:353 → 612
      ser_rich_anae_1; serine-rich protein

    8. XM_032416414.1 → XP_032272305.1  trinucleotide repeat-containing gene 6B protein isoform X3

      Related
      ENSPVHP00000023397.1, ENSPVHT00000026288.1
      Conserved Domains (4) summary
      pfam10427
      Location:919 → 1062
      Ago_hook; Argonaute hook
      pfam16608
      Location:1355 → 1639
      TNRC6-PABC_bdg; TNRC6-PABC binding domain
      cd12712
      Location:1641 → 1723
      RRM_TNRC6B; RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B)
      NF033849
      Location:330 → 589
      ser_rich_anae_1; serine-rich protein
    Nucleotide Protein
    Heading Accession and Version

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