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    LOC107308162 SET domain bifurcated histone lysine methyltransferase 2 [ Coturnix japonica (Japanese quail) ]

    Gene ID: 107308162, updated on 14-Nov-2024

    Summary

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    Gene symbol
    LOC107308162
    Gene description
    SET domain bifurcated histone lysine methyltransferase 2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Coturnix japonica
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Perdicinae; Coturnix
    Also known as
    PHF11; SETDB2
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    Genomic context

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    See LOC107308162 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    101 current Coturnix japonica 2.1 (GCF_001577835.2) 1 NC_029516.1 (151413399..151434156)

    Chromosome 1 - NC_029516.1Genomic Context describing neighboring genes Neighboring gene cytidine and dCMP deaminase domain containing 1 Neighboring gene uncharacterized LOC116652761 Neighboring gene calcium binding protein 39 like Neighboring gene RCC1 and BTB domain containing protein 1 Neighboring gene ARF like GTPase 11

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029516.1 Chromosome 1 Reference Coturnix japonica 2.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone H3K9 methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in heterochromatin organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histone-lysine N-methyltransferase SETDB2
    Names
    PHD finger protein 11
    SET domain bifurcated 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Coturnix japonica Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Coturnix japonica 2.1 Primary Assembly

    Genomic

    1. NC_029516.1 Reference Coturnix japonica 2.1 Primary Assembly

      Range
      151413399..151434156
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015851827.2 → XP_015707313.2  histone-lysine N-methyltransferase SETDB2

      Conserved Domains (3) summary
      cd01395
      Location:182 → 242
      HMT_MBD; Methyl-CpG binding domains (MBD) present in putative histone methyltransferases (HMT) such as CLLD8 and SETDB1 proteins; CLLD8 contains a MBD, a PreSET and a bifurcated SET domain, suggesting that CLLD8 might be associated with methylation-mediated ...
      cd15712
      Location:759 → 873
      ePHD_PHF11; Extended PHD finger found in PHD finger protein 11 (PHF11)
      cl40432
      Location:240 → 729
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain superfamily
    Nucleotide Protein
    Heading Accession and Version

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