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    PCDH15 protocadherin related 15 [ Coturnix japonica (Japanese quail) ]

    Gene ID: 107315611, updated on 14-Mar-2024

    Summary

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    Gene symbol
    PCDH15
    Gene description
    protocadherin related 15
    See related
    Ensembl:ENSCJPG00005012776
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Coturnix japonica
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Perdicinae; Coturnix
    Orthologs
    human mouse all
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    Genomic context

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    See PCDH15 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    50
    Annotation release Status Assembly Chr Location
    101 current Coturnix japonica 2.1 (GCF_001577835.2) 6 NC_029521.1 (4264801..5079594, complement)

    Chromosome 6 - NC_029521.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 149 member B1 Neighboring gene ecdysoneless cell cycle regulator Neighboring gene uncharacterized LOC107315652 Neighboring gene uncharacterized LOC107315653 Neighboring gene uncharacterized LOC107315648 Neighboring gene uncharacterized LOC107315649 Neighboring gene uncharacterized LOC107315642 Neighboring gene uncharacterized LOC107315643

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029521.1 Chromosome 6 Reference Coturnix japonica 2.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cadherin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in adherens junction organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell-cell junction assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in inner ear development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sensory perception of sound IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in adherens junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of catenin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in stereocilium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protocadherin-15

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Coturnix japonica Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Coturnix japonica 2.1 Primary Assembly

    Genomic

    1. NC_029521.1 Reference Coturnix japonica 2.1 Primary Assembly

      Range
      4264801..5079594 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032445316.1 → XP_032301207.1  protocadherin-15 isoform X5

      Conserved Domains (2) summary
      cd11304
      Location:1045 → 1140
      Cadherin_repeat; Cadherin tandem repeat domain
      pfam18432
      Location:31 → 140
      ECD; Extracellular Cadherin domain

    2. XM_032445314.1 → XP_032301205.1  protocadherin-15 isoform X3

      UniProtKB/TrEMBL
      A0A8C2TKW1
      Related
      ENSCJPP00005015443.1, ENSCJPT00005021897.1
      Conserved Domains (2) summary
      cd11304
      Location:1045 → 1140
      Cadherin_repeat; Cadherin tandem repeat domain
      pfam18432
      Location:31 → 140
      ECD; Extracellular Cadherin domain

    3. XM_032445315.1 → XP_032301206.1  protocadherin-15 isoform X4

      UniProtKB/TrEMBL
      A0A8C2TL83
      Related
      ENSCJPP00005015587.1, ENSCJPT00005022072.1
      Conserved Domains (2) summary
      cd11304
      Location:1045 → 1140
      Cadherin_repeat; Cadherin tandem repeat domain
      pfam18432
      Location:31 → 140
      ECD; Extracellular Cadherin domain

    4. XM_032445309.1 → XP_032301200.1  protocadherin-15 isoform X1

      Conserved Domains (2) summary
      cd11304
      Location:1050 → 1145
      Cadherin_repeat; Cadherin tandem repeat domain
      pfam18432
      Location:36 → 145
      ECD; Extracellular Cadherin domain

    5. XM_032445312.1 → XP_032301203.1  protocadherin-15 isoform X1

      Conserved Domains (2) summary
      cd11304
      Location:1050 → 1145
      Cadherin_repeat; Cadherin tandem repeat domain
      pfam18432
      Location:36 → 145
      ECD; Extracellular Cadherin domain

    6. XM_032445311.1 → XP_032301202.1  protocadherin-15 isoform X1

      Conserved Domains (2) summary
      cd11304
      Location:1050 → 1145
      Cadherin_repeat; Cadherin tandem repeat domain
      pfam18432
      Location:36 → 145
      ECD; Extracellular Cadherin domain

    7. XM_032445310.1 → XP_032301201.1  protocadherin-15 isoform X1

      Conserved Domains (2) summary
      cd11304
      Location:1050 → 1145
      Cadherin_repeat; Cadherin tandem repeat domain
      pfam18432
      Location:36 → 145
      ECD; Extracellular Cadherin domain

    8. XM_015866138.2 → XP_015721624.2  protocadherin-15 isoform X1

      Conserved Domains (2) summary
      cd11304
      Location:1050 → 1145
      Cadherin_repeat; Cadherin tandem repeat domain
      pfam18432
      Location:36 → 145
      ECD; Extracellular Cadherin domain

    9. XM_032445313.1 → XP_032301204.1  protocadherin-15 isoform X2

      UniProtKB/TrEMBL
      A0A8C2TQ00
      Related
      ENSCJPP00005015469.1, ENSCJPT00005021933.1
      Conserved Domains (2) summary
      cd11304
      Location:1045 → 1140
      Cadherin_repeat; Cadherin tandem repeat domain
      pfam18432
      Location:31 → 140
      ECD; Extracellular Cadherin domain
    Nucleotide Protein
    Heading Accession and Version

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