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    srsf5a serine and arginine rich splicing factor 5a [ Etheostoma spectabile (orangethroat darter) ]

    Gene ID: 116669723, updated on 18-Mar-2024

    Summary

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    Gene symbol
    srsf5a
    Gene description
    serine and arginine rich splicing factor 5a
    Locus tag
    FQN60_008613
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Etheostoma spectabile
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Etheostomatinae; Etheostoma
    Also known as
    srsf5
    Orthologs
    zebrafish all
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    Genomic context

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    See srsf5a in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current UIUC_Espe_1.0 (GCF_008692095.1) 20 NC_045752.1 (1030942..1037945, complement)

    Chromosome 20 - NC_045752.1Genomic Context describing neighboring genes Neighboring gene ddb1 and cul4 associated factor 5 Neighboring gene phosphofurin acidic cluster sorting protein 2 Neighboring gene uncharacterized LOC116669742 Neighboring gene deubiquitinase DESI2-like Neighboring gene synaptojanin 2 binding protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_045752.1 Chromosome 20 Reference UIUC_Espe_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/arginine-rich splicing factor 5
    Names
    serine and arginine rich splicing factor 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Etheostoma spectabile Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UIUC_Espe_1.0 Primary Assembly

    Genomic

    1. NC_045752.1 Reference UIUC_Espe_1.0 Primary Assembly

      Range
      1030942..1037945 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032499745.1 → XP_032355636.1  serine/arginine-rich splicing factor 5 isoform X2

      Conserved Domains (2) summary
      cd12337
      Location:5 → 72
      RRM1_SRSF4_like; RNA recognition motif 1 (RRM1) found in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins
      cd12600
      Location:124 → 195
      RRM2_SRSF4_like; RNA recognition motif 2 (RRM2) found in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins

    2. XM_032499748.1 → XP_032355639.1  serine/arginine-rich splicing factor 5 isoform X5

      Conserved Domains (2) summary
      cd12337
      Location:5 → 72
      RRM1_SRSF4_like; RNA recognition motif 1 (RRM1) found in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins
      cd12600
      Location:127 → 198
      RRM2_SRSF4_like; RNA recognition motif 2 (RRM2) found in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins

    3. XM_032499747.1 → XP_032355638.1  serine/arginine-rich splicing factor 5 isoform X4

      Conserved Domains (2) summary
      cd12337
      Location:5 → 72
      RRM1_SRSF4_like; RNA recognition motif 1 (RRM1) found in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins
      cd12600
      Location:127 → 198
      RRM2_SRSF4_like; RNA recognition motif 2 (RRM2) found in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins

    4. XM_032499746.1 → XP_032355637.1  serine/arginine-rich splicing factor 5 isoform X3

      Conserved Domains (2) summary
      cd12337
      Location:5 → 72
      RRM1_SRSF4_like; RNA recognition motif 1 (RRM1) found in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins
      cd12600
      Location:127 → 198
      RRM2_SRSF4_like; RNA recognition motif 2 (RRM2) found in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins

    5. XM_032499743.1 → XP_032355634.1  serine/arginine-rich splicing factor 5 isoform X1

      Conserved Domains (2) summary
      cd12337
      Location:5 → 72
      RRM1_SRSF4_like; RNA recognition motif 1 (RRM1) found in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins
      cd12600
      Location:127 → 198
      RRM2_SRSF4_like; RNA recognition motif 2 (RRM2) found in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins

    6. XM_032499744.1 → XP_032355635.1  serine/arginine-rich splicing factor 5 isoform X1

      Conserved Domains (2) summary
      cd12337
      Location:5 → 72
      RRM1_SRSF4_like; RNA recognition motif 1 (RRM1) found in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins
      cd12600
      Location:127 → 198
      RRM2_SRSF4_like; RNA recognition motif 2 (RRM2) found in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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