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    STAT1 signal transducer and activator of transcription 1 [ Phocoena sinus (vaquita) ]

    Gene ID: 116757187, updated on 11-Apr-2024

    Summary

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    Gene symbol
    STAT1
    Gene description
    signal transducer and activator of transcription 1
    See related
    Ensembl:ENSPSNG00000002959
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Phocoena sinus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Phocoena
    Orthologs
    human mouse all
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    Genomic context

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    See STAT1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    100 current mPhoSin1.pri (GCF_008692025.1) 7 NC_045769.1 (43861117..43904941)

    Chromosome 7 - NC_045769.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116757064 Neighboring gene signal transducer and activator of transcription 4 Neighboring gene glutaminase Neighboring gene endonuclease V-like Neighboring gene uncharacterized LOC116756851 Neighboring gene NGFI-A binding protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_045769.1 Chromosome 7 Reference mPhoSin1.pri

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell surface receptor signaling pathway via JAK-STAT IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in defense response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cell population proliferation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to peptide hormone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in type I interferon-mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    signal transducer and activator of transcription 1-alpha/beta

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Phocoena sinus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mPhoSin1.pri

    Genomic

    1. NC_045769.1 Reference mPhoSin1.pri

      Range
      43861117..43904941
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032638662.1 → XP_032494553.1  signal transducer and activator of transcription 1-alpha/beta isoform X3

      UniProtKB/TrEMBL
      A0A8C9DY60
      Related
      ENSPSNP00000003997.1, ENSPSNT00000004569.1
      Conserved Domains (5) summary
      cd10372
      Location:557 → 706
      SH2_STAT1; Src homology 2 (SH2) domain found in signal transducer and activator of transcription (STAT) 1 proteins
      smart00964
      Location:2 → 121
      STAT_int; STAT protein, protein interaction domain
      cd16851
      Location:138 → 313
      STAT1_CCD; Coiled-coil domain of Signal Transducer and Activator of Transcription 1 (STAT1)
      cd16845
      Location:317 → 477
      STAT1_DBD; DNA-binding domain of Signal Transducer and Activator of Transcription 1 (STAT1)
      pfam12162
      Location:714 → 738
      STAT1_TAZ2bind; STAT1 TAZ2 binding domain

    2. XM_032638659.1 → XP_032494550.1  signal transducer and activator of transcription 1-alpha/beta isoform X1

      UniProtKB/TrEMBL
      A0A8C9DY60
      Conserved Domains (5) summary
      cd10372
      Location:557 → 707
      SH2_STAT1; Src homology 2 (SH2) domain found in signal transducer and activator of transcription (STAT) 1 proteins
      smart00964
      Location:2 → 121
      STAT_int; STAT protein, protein interaction domain
      cd16851
      Location:138 → 313
      STAT1_CCD; Coiled-coil domain of Signal Transducer and Activator of Transcription 1 (STAT1)
      cd16845
      Location:317 → 477
      STAT1_DBD; DNA-binding domain of Signal Transducer and Activator of Transcription 1 (STAT1)
      pfam12162
      Location:715 → 739
      STAT1_TAZ2bind; STAT1 TAZ2 binding domain

    3. XM_032638661.1 → XP_032494552.1  signal transducer and activator of transcription 1-alpha/beta isoform X2

      UniProtKB/TrEMBL
      A0A8C9B2M9, A0A8C9DY60
      Conserved Domains (5) summary
      cd10372
      Location:557 → 707
      SH2_STAT1; Src homology 2 (SH2) domain found in signal transducer and activator of transcription (STAT) 1 proteins
      smart00964
      Location:2 → 121
      STAT_int; STAT protein, protein interaction domain
      cd16851
      Location:138 → 313
      STAT1_CCD; Coiled-coil domain of Signal Transducer and Activator of Transcription 1 (STAT1)
      cd16845
      Location:317 → 477
      STAT1_DBD; DNA-binding domain of Signal Transducer and Activator of Transcription 1 (STAT1)
      pfam12162
      Location:715 → 739
      STAT1_TAZ2bind; STAT1 TAZ2 binding domain

    4. XM_032638663.1 → XP_032494554.1  signal transducer and activator of transcription 1-alpha/beta isoform X4

      UniProtKB/TrEMBL
      A0A8C9DY60
      Conserved Domains (4) summary
      cd10372
      Location:457 → 607
      SH2_STAT1; Src homology 2 (SH2) domain found in signal transducer and activator of transcription (STAT) 1 proteins
      cd16851
      Location:38 → 213
      STAT1_CCD; Coiled-coil domain of Signal Transducer and Activator of Transcription 1 (STAT1)
      cd16845
      Location:217 → 377
      STAT1_DBD; DNA-binding domain of Signal Transducer and Activator of Transcription 1 (STAT1)
      pfam12162
      Location:615 → 639
      STAT1_TAZ2bind; STAT1 TAZ2 binding domain

    5. XM_032638660.1 → XP_032494551.1  signal transducer and activator of transcription 1-alpha/beta isoform X2

      UniProtKB/TrEMBL
      A0A8C9B2M9, A0A8C9DY60
      Related
      ENSPSNP00000003947.1, ENSPSNT00000004510.1
      Conserved Domains (5) summary
      cd10372
      Location:557 → 707
      SH2_STAT1; Src homology 2 (SH2) domain found in signal transducer and activator of transcription (STAT) 1 proteins
      smart00964
      Location:2 → 121
      STAT_int; STAT protein, protein interaction domain
      cd16851
      Location:138 → 313
      STAT1_CCD; Coiled-coil domain of Signal Transducer and Activator of Transcription 1 (STAT1)
      cd16845
      Location:317 → 477
      STAT1_DBD; DNA-binding domain of Signal Transducer and Activator of Transcription 1 (STAT1)
      pfam12162
      Location:715 → 739
      STAT1_TAZ2bind; STAT1 TAZ2 binding domain

    6. XM_032638658.1 → XP_032494549.1  signal transducer and activator of transcription 1-alpha/beta isoform X1

      UniProtKB/TrEMBL
      A0A8C9DY60
      Conserved Domains (5) summary
      cd10372
      Location:557 → 707
      SH2_STAT1; Src homology 2 (SH2) domain found in signal transducer and activator of transcription (STAT) 1 proteins
      smart00964
      Location:2 → 121
      STAT_int; STAT protein, protein interaction domain
      cd16851
      Location:138 → 313
      STAT1_CCD; Coiled-coil domain of Signal Transducer and Activator of Transcription 1 (STAT1)
      cd16845
      Location:317 → 477
      STAT1_DBD; DNA-binding domain of Signal Transducer and Activator of Transcription 1 (STAT1)
      pfam12162
      Location:715 → 739
      STAT1_TAZ2bind; STAT1 TAZ2 binding domain

    7. XM_032638664.1 → XP_032494555.1  signal transducer and activator of transcription 1-alpha/beta isoform X5

      UniProtKB/TrEMBL
      A0A8C9DY60
      Conserved Domains (4) summary
      cd10372
      Location:443 → 593
      SH2_STAT1; Src homology 2 (SH2) domain found in signal transducer and activator of transcription (STAT) 1 proteins
      cd16851
      Location:24 → 199
      STAT1_CCD; Coiled-coil domain of Signal Transducer and Activator of Transcription 1 (STAT1)
      cd16845
      Location:203 → 363
      STAT1_DBD; DNA-binding domain of Signal Transducer and Activator of Transcription 1 (STAT1)
      pfam12162
      Location:601 → 625
      STAT1_TAZ2bind; STAT1 TAZ2 binding domain

    8. XM_032638665.1 → XP_032494556.1  signal transducer and activator of transcription 1-alpha/beta isoform X6

      UniProtKB/TrEMBL
      A0A8C9DY60
      Conserved Domains (4) summary
      cd10372
      Location:423 → 573
      SH2_STAT1; Src homology 2 (SH2) domain found in signal transducer and activator of transcription (STAT) 1 proteins
      cd16851
      Location:4 → 179
      STAT1_CCD; Coiled-coil domain of Signal Transducer and Activator of Transcription 1 (STAT1)
      cd16845
      Location:183 → 343
      STAT1_DBD; DNA-binding domain of Signal Transducer and Activator of Transcription 1 (STAT1)
      pfam12162
      Location:581 → 605
      STAT1_TAZ2bind; STAT1 TAZ2 binding domain
    Nucleotide Protein
    Heading Accession and Version

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