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    RXRG retinoid X receptor gamma [ Chiroxiphia lanceolata (lance-tailed manakin) ]

    Gene ID: 116791343, updated on 3-Aug-2024

    Summary

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    Gene symbol
    RXRG
    Gene description
    retinoid X receptor gamma
    See related
    EnsemblRapid:ENSCLNG00000005310
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Chiroxiphia lanceolata
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Pipridae; Chiroxiphia
    Orthologs
    human mouse all
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    Genomic context

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    See RXRG in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    100 current bChiLan1.pri (GCF_009829145.1) 9 NC_045645.1 (25896141..25944147)

    Chromosome 9 - NC_045645.1Genomic Context describing neighboring genes Neighboring gene methyltransferase 18, RPL3 N3(tau)-histidine Neighboring gene 14 kDa phosphohistidine phosphatase-like Neighboring gene FIGNL1 interacting regulator of recombination and mitosis Neighboring gene selectin E Neighboring gene LIM homeobox transcription factor 1 alpha Neighboring gene PBX homeobox 1 Neighboring gene uncharacterized LOC116790784

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_045645.1 Chromosome 9 Reference bChiLan1.pri

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear steroid receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables retinoic acid-responsive element binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anatomical structure development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to retinoic acid IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retinoic acid receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase II transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    retinoic acid receptor RXR-gamma

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Chiroxiphia lanceolata Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bChiLan1.pri

    Genomic

    1. NC_045645.1 Reference bChiLan1.pri

      Range
      25896141..25944147
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032697252.1 → XP_032553143.1  retinoic acid receptor RXR-gamma isoform X1

      Conserved Domains (3) summary
      cd06943
      Location:253 → 461
      NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
      cd06956
      Location:157 → 233
      NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
      pfam11825
      Location:56 → 153
      Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

    2. XM_032697253.1 → XP_032553144.1  retinoic acid receptor RXR-gamma isoform X1

      Related
      ENSCLNP00000007583.1, ENSCLNT00000008063.1
      Conserved Domains (3) summary
      cd06943
      Location:253 → 461
      NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
      cd06956
      Location:157 → 233
      NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
      pfam11825
      Location:56 → 153
      Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

    3. XM_032697254.1 → XP_032553145.1  retinoic acid receptor RXR-gamma isoform X2

      Conserved Domains (3) summary
      cd06943
      Location:238 → 446
      NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
      cd06956
      Location:142 → 218
      NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
      pfam11825
      Location:41 → 138
      Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1

    4. XM_032697255.1 → XP_032553146.1  retinoic acid receptor RXR-gamma isoform X3

      Conserved Domains (3) summary
      cd06943
      Location:237 → 445
      NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
      cd06956
      Location:141 → 217
      NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
      pfam11825
      Location:40 → 137
      Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1
    Nucleotide Protein
    Heading Accession and Version

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