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    LOC116839976 Krueppel-like factor 5 [ Chelonoidis abingdonii (Abingdon island giant tortoise) ]

    Gene ID: 116839976, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC116839976
    Gene description
    Krueppel-like factor 5
    See related
    Ensembl:ENSCABG00000020236
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Chelonoidis abingdonii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Testudinidae; Chelonoidis
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    Genomic context

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    See LOC116839976 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current ASM359739v1 (GCF_003597395.1) Unplaced Scaffold NW_022646752.1 (427740..467735, complement)

    NW_022646752.1Genomic Context describing neighboring genes Neighboring gene exocyst complex component 1-like Neighboring gene BTB/POZ domain-containing protein KCTD12-like Neighboring gene KLF transcription factor 8 Neighboring gene TNFAIP3-interacting protein 3-like Neighboring gene uncharacterized LOC116839981

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_022646752 Unplaced Scaffold Reference ASM359739v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Krueppel-like factor 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Chelonoidis abingdonii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM359739v1

    Genomic

    1. NW_022646752.1 Reference ASM359739v1

      Range
      427740..467735 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032806300.1 → XP_032662191.1  Krueppel-like factor 5 isoform X2

      UniProtKB/TrEMBL
      A0A8C0J630
      Related
      ENSCABP00000027540.1, ENSCABT00000030164.1
      Conserved Domains (4) summary
      COG5048
      Location:330 → 416
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:354 → 373
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:395 → 420
      zf-H2C2_2; Zinc-finger double domain
      cd21579
      Location:3 → 346
      KLF5_N; N-terminal domain of Kruppel-like factor 5

    2. XM_032806299.1 → XP_032662190.1  Krueppel-like factor 5 isoform X1

      UniProtKB/TrEMBL
      A0A8C0J630
      Conserved Domains (4) summary
      COG5048
      Location:345 → 431
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:369 → 388
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:410 → 435
      zf-H2C2_2; Zinc-finger double domain
      cd21579
      Location:3 → 361
      KLF5_N; N-terminal domain of Kruppel-like factor 5
    Nucleotide Protein
    Heading Accession and Version

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