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    LHX3 LIM homeobox 3 [ Lontra canadensis (Northern American river otter) ]

    Gene ID: 116872887, updated on 18-Mar-2024

    Summary

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    Gene symbol
    LHX3
    Gene description
    LIM homeobox 3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lontra canadensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Lutrinae; Lontra
    Orthologs
    human mouse all
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    Genomic context

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    See LHX3 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    100 current GSC_riverotter_1.0 (GCF_010015895.1) Unplaced Scaffold NW_022631024.1 (18268647..18276030)

    NW_022631024.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 187 Neighboring gene quiescin sulfhydryl oxidase 2 Neighboring gene transmembrane protein 250 Neighboring gene NACC family member 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_022631024 Unplaced Scaffold Reference GSC_riverotter_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in neuron differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LIM/homeobox protein Lhx3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Lontra canadensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GSC_riverotter_1.0

    Genomic

    1. NW_022631024.1 Reference GSC_riverotter_1.0

      Range
      18268647..18276030
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032866402.1 → XP_032722293.1  LIM/homeobox protein Lhx3

      Conserved Domains (4) summary
      cd09376
      Location:426 → 481
      LIM2_Lhx3_Lhx4; The second LIM domain of Lhx3-Lhx4 family
      cd09467
      Location:364 → 418
      LIM1_Lhx3b; The first LIM domain of Lhx3b
      PHA03247
      Location:35 → 365
      PHA03247; large tegument protein UL36; Provisional
      pfam00046
      Location:496 → 550
      Homeobox; Homeobox domain
    Nucleotide Protein
    Heading Accession and Version

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