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    PDLIM3 PDZ and LIM domain 3 [ Lacerta agilis ]

    Gene ID: 117052730, updated on 19-Mar-2024

    Summary

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    Gene symbol
    PDLIM3
    Gene description
    PDZ and LIM domain 3
    See related
    EnsemblRapid:ENSLAGG00000020169
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lacerta agilis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Laterata; Lacertibaenia; Lacertidae; Lacerta
    Orthologs
    human mouse all
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    Genomic context

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    See PDLIM3 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    100 current rLacAgi1.pri (GCF_009819535.1) 9 NC_046320.1 (24513039..24535818)

    Chromosome 9 - NC_046320.1Genomic Context describing neighboring genes Neighboring gene sorbin and SH3 domain containing 2 Neighboring gene uncharacterized LOC117053501 Neighboring gene uncharacterized LOC117053500 Neighboring gene coiled-coil domain containing 110 Neighboring gene cilia and flagella associated protein 96 Neighboring gene UFM1 specific peptidase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_046320.1 Chromosome 9 Reference rLacAgi1.pri Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables muscle alpha-actinin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in heart development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in muscle structure development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Z disc IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in adherens junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of filamentous actin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in stress fiber IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PDZ and LIM domain protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Lacerta agilis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rLacAgi1.pri Primary Assembly

    Genomic

    1. NC_046320.1 Reference rLacAgi1.pri Primary Assembly

      Range
      24513039..24535818
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_033159818.1 → XP_033015709.1  PDZ and LIM domain protein 3 isoform X1

      Conserved Domains (4) summary
      smart00735
      Location:135 → 160
      ZM; ZASP-like motif
      cd09450
      Location:332 → 384
      LIM_ALP; This family represents the LIM domain of ALP, actinin-associated LIM protein
      cd00992
      Location:2 → 81
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam15936
      Location:222 → 301
      DUF4749; Domain of unknown function (DUF4749)

    2. XM_033159820.1 → XP_033015711.1  PDZ and LIM domain protein 3 isoform X3

      Related
      ENSLAGP00000028741.1, ENSLAGT00000030579.1
      Conserved Domains (3) summary
      cd09450
      Location:244 → 296
      LIM_ALP; This family represents the LIM domain of ALP, actinin-associated LIM protein
      cd00992
      Location:2 → 81
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam15936
      Location:135 → 213
      DUF4749; Domain of unknown function (DUF4749)

    3. XM_033159819.1 → XP_033015710.1  PDZ and LIM domain protein 3 isoform X2

      Conserved Domains (3) summary
      cd09450
      Location:292 → 344
      LIM_ALP; This family represents the LIM domain of ALP, actinin-associated LIM protein
      cd00992
      Location:2 → 81
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam15936
      Location:182 → 261
      DUF4749; Domain of unknown function (DUF4749)

    4. XM_033159821.1 → XP_033015712.1  PDZ and LIM domain protein 3 isoform X4

      Related
      ENSLAGP00000028742.1, ENSLAGT00000030580.1
      Conserved Domains (3) summary
      cd09450
      Location:204 → 256
      LIM_ALP; This family represents the LIM domain of ALP, actinin-associated LIM protein
      cd00992
      Location:2 → 81
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam15936
      Location:126 → 173
      DUF4749; Domain of unknown function (DUF4749)
    Nucleotide Protein
    Heading Accession and Version

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