U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    plxnb2b plexin b2b [ Thalassophryne amazonica ]

    Gene ID: 117515493, updated on 19-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    plxnb2b
    Gene description
    plexin b2b
    See related
    EnsemblRapid:ENSTAMG00005001493
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Thalassophryne amazonica
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Batrachoidaria; Batrachoididae; Thalassophryne
    Orthologs
    human zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See plxnb2b in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    37
    Annotation release Status Assembly Chr Location
    100 current fThaAma1.1 (GCF_902500255.1) 8 NC_047110.1 (42654158..43046128)

    Chromosome 8 - NC_047110.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117515071 Neighboring gene U4 spliceosomal RNA Neighboring gene uncharacterized LOC117515494 Neighboring gene uncharacterized LOC117515497 Neighboring gene tubulin gamma complex component 6 Neighboring gene adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_047110.1 Chromosome 8 Reference fThaAma1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables semaphorin receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of axonogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cell shape IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in semaphorin-plexin signaling pathway involved in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of semaphorin receptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    plexin-B2b

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Thalassophryne amazonica Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fThaAma1.1

    Genomic

    1. NC_047110.1 Reference fThaAma1.1

      Range
      42654158..43046128
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034176072.1 → XP_034031963.1  plexin-B2b

      Related
      ENSTAMP00005011074.1, ENSTAMT00005011485.1
      Conserved Domains (6) summary
      cd12792
      Location:1297 → 1862
      RasGAP_plexin_B2; Ras-GTPase Activating Domain of plexin-B2
      smart00423
      Location:788 → 834
      PSI; domain found in Plexins, Semaphorins and Integrins
      pfam01437
      Location:492 → 537
      PSI; Plexin repeat
      pfam17960
      Location:549 → 638
      TIG_plexin; TIG domain
      cl15674
      Location:836 → 926
      IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
      cl15693
      Location:31 → 491
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

    2. XM_034176073.1 → XP_034031964.1  plexin-B2b

      Related
      ENSTAMP00005011097.1, ENSTAMT00005011508.1
      Conserved Domains (6) summary
      cd12792
      Location:1297 → 1862
      RasGAP_plexin_B2; Ras-GTPase Activating Domain of plexin-B2
      smart00423
      Location:788 → 834
      PSI; domain found in Plexins, Semaphorins and Integrins
      pfam01437
      Location:492 → 537
      PSI; Plexin repeat
      pfam17960
      Location:549 → 638
      TIG_plexin; TIG domain
      cl15674
      Location:836 → 926
      IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
      cl15693
      Location:31 → 491
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases