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    syngap1a synaptic Ras GTPase activating protein 1a [ Esox lucius (northern pike) ]

    Gene ID: 105012734, updated on 18-Jun-2024

    Summary

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    Gene symbol
    syngap1a
    Gene description
    synaptic Ras GTPase activating protein 1a
    See related
    Ensembl:ENSELUG00000013100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Esox lucius
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
    Orthologs
    zebrafish all
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    Genomic context

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    See syngap1a in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    104 current fEsoLuc1.pri (GCF_011004845.1) 10 NC_047578.1 (16454038..16537140, complement)
    103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG10 NC_025977.4 (16547529..16635951, complement)

    Chromosome 10 - NC_047578.1Genomic Context describing neighboring genes Neighboring gene septin-11 Neighboring gene relaxin-3 receptor 1 Neighboring gene tropomyosin 3 Neighboring gene Rho guanine nucleotide exchange factor (GEF) 2a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ras/Rap GTPase-activating protein SynGAP

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fEsoLuc1.pri Primary Assembly

    Genomic

    1. NC_047578.1 Reference fEsoLuc1.pri Primary Assembly

      Range
      16454038..16537140 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020050393.3 → XP_019905952.1  ras/Rap GTPase-activating protein SynGAP isoform X2

      UniProtKB/TrEMBL
      A0A3P8Y8A7, A0A3P8YAG4
      Conserved Domains (4) summary
      cd04013
      Location:242 → 388
      C2_SynGAP_like; C2 domain present in Ras GTPase activating protein (GAP) family
      cd05136
      Location:379 → 702
      RasGAP_DAB2IP; Ras-GTPase Activating Domain of DAB2IP and similar proteins
      pfam12004
      Location:692 → 1317
      DUF3498; Domain of unknown function (DUF3498)
      cl17171
      Location:109 → 300
      PH-like; Pleckstrin homology-like domain

    2. XM_010873783.5 → XP_010872085.1  ras/Rap GTPase-activating protein SynGAP isoform X1

      UniProtKB/TrEMBL
      A0A3P8YAG4
      Conserved Domains (6) summary
      cd04013
      Location:242 → 388
      C2_SynGAP_like; C2 domain present in Ras GTPase activating protein (GAP) family
      cd05136
      Location:379 → 702
      RasGAP_DAB2IP; Ras-GTPase Activating Domain of DAB2IP and similar proteins
      smart00323
      Location:370 → 694
      RasGAP; GTPase-activator protein for Ras-like GTPases
      pfam12004
      Location:692 → 1345
      DUF3498; Domain of unknown function (DUF3498)
      pfam15272
      Location:1204 → 1319
      BBP1_C; Spindle pole body component BBP1, C-terminal
      cl17171
      Location:109 → 300
      PH-like; Pleckstrin homology-like domain

    3. XM_020050399.3 → XP_019905958.1  ras/Rap GTPase-activating protein SynGAP isoform X3

      UniProtKB/TrEMBL
      A0A3P8YAG4
      Conserved Domains (4) summary
      cd04013
      Location:205 → 351
      C2_SynGAP_like; C2 domain present in Ras GTPase activating protein (GAP) family
      cd05136
      Location:342 → 665
      RasGAP_DAB2IP; Ras-GTPase Activating Domain of DAB2IP and similar proteins
      pfam12004
      Location:655 → 1308
      DUF3498; Domain of unknown function (DUF3498)
      cl17171
      Location:72 → 263
      PH-like; Pleckstrin homology-like domain

    4. XM_020050398.3 → XP_019905957.1  ras/Rap GTPase-activating protein SynGAP isoform X3

      UniProtKB/TrEMBL
      A0A3P8YAG4
      Conserved Domains (4) summary
      cd04013
      Location:205 → 351
      C2_SynGAP_like; C2 domain present in Ras GTPase activating protein (GAP) family
      cd05136
      Location:342 → 665
      RasGAP_DAB2IP; Ras-GTPase Activating Domain of DAB2IP and similar proteins
      pfam12004
      Location:655 → 1308
      DUF3498; Domain of unknown function (DUF3498)
      cl17171
      Location:72 → 263
      PH-like; Pleckstrin homology-like domain

    5. XM_020050396.3 → XP_019905955.1  ras/Rap GTPase-activating protein SynGAP isoform X3

      UniProtKB/TrEMBL
      A0A3P8YAG4
      Conserved Domains (4) summary
      cd04013
      Location:205 → 351
      C2_SynGAP_like; C2 domain present in Ras GTPase activating protein (GAP) family
      cd05136
      Location:342 → 665
      RasGAP_DAB2IP; Ras-GTPase Activating Domain of DAB2IP and similar proteins
      pfam12004
      Location:655 → 1308
      DUF3498; Domain of unknown function (DUF3498)
      cl17171
      Location:72 → 263
      PH-like; Pleckstrin homology-like domain

    6. XM_020050397.3 → XP_019905956.1  ras/Rap GTPase-activating protein SynGAP isoform X3

      UniProtKB/TrEMBL
      A0A3P8YAG4
      Conserved Domains (4) summary
      cd04013
      Location:205 → 351
      C2_SynGAP_like; C2 domain present in Ras GTPase activating protein (GAP) family
      cd05136
      Location:342 → 665
      RasGAP_DAB2IP; Ras-GTPase Activating Domain of DAB2IP and similar proteins
      pfam12004
      Location:655 → 1308
      DUF3498; Domain of unknown function (DUF3498)
      cl17171
      Location:72 → 263
      PH-like; Pleckstrin homology-like domain

    7. XM_020050394.3 → XP_019905953.1  ras/Rap GTPase-activating protein SynGAP isoform X3

      UniProtKB/TrEMBL
      A0A3P8YAG4
      Conserved Domains (4) summary
      cd04013
      Location:205 → 351
      C2_SynGAP_like; C2 domain present in Ras GTPase activating protein (GAP) family
      cd05136
      Location:342 → 665
      RasGAP_DAB2IP; Ras-GTPase Activating Domain of DAB2IP and similar proteins
      pfam12004
      Location:655 → 1308
      DUF3498; Domain of unknown function (DUF3498)
      cl17171
      Location:72 → 263
      PH-like; Pleckstrin homology-like domain

    8. XM_020050405.3 → XP_019905964.1  ras/Rap GTPase-activating protein SynGAP isoform X8

      UniProtKB/TrEMBL
      A0A3P8Y846
      Related
      ENSELUP00000092458.1, ENSELUT00000106137.1
      Conserved Domains (4) summary
      cd04013
      Location:242 → 388
      C2_SynGAP_like; C2 domain present in Ras GTPase activating protein (GAP) family
      cd05136
      Location:379 → 702
      RasGAP_DAB2IP; Ras-GTPase Activating Domain of DAB2IP and similar proteins
      pfam12004
      Location:692 → 1317
      DUF3498; Domain of unknown function (DUF3498)
      cl17171
      Location:109 → 300
      PH-like; Pleckstrin homology-like domain

    9. XM_020050403.3 → XP_019905962.1  ras/Rap GTPase-activating protein SynGAP isoform X6

      UniProtKB/TrEMBL
      A0A3P8Y846
      Related
      ENSELUP00000034481.3, ENSELUT00000021279.3
      Conserved Domains (4) summary
      cd04013
      Location:242 → 388
      C2_SynGAP_like; C2 domain present in Ras GTPase activating protein (GAP) family
      cd05136
      Location:379 → 702
      RasGAP_DAB2IP; Ras-GTPase Activating Domain of DAB2IP and similar proteins
      pfam12004
      Location:692 → 1332
      DUF3498; Domain of unknown function (DUF3498)
      cl17171
      Location:109 → 300
      PH-like; Pleckstrin homology-like domain

    10. XM_020050395.3 → XP_019905954.1  ras/Rap GTPase-activating protein SynGAP isoform X3

      UniProtKB/TrEMBL
      A0A3P8YAG4
      Conserved Domains (4) summary
      cd04013
      Location:205 → 351
      C2_SynGAP_like; C2 domain present in Ras GTPase activating protein (GAP) family
      cd05136
      Location:342 → 665
      RasGAP_DAB2IP; Ras-GTPase Activating Domain of DAB2IP and similar proteins
      pfam12004
      Location:655 → 1308
      DUF3498; Domain of unknown function (DUF3498)
      cl17171
      Location:72 → 263
      PH-like; Pleckstrin homology-like domain

    11. XM_020050400.3 → XP_019905959.1  ras/Rap GTPase-activating protein SynGAP isoform X3

      UniProtKB/TrEMBL
      A0A3P8YAG4
      Conserved Domains (4) summary
      cd04013
      Location:205 → 351
      C2_SynGAP_like; C2 domain present in Ras GTPase activating protein (GAP) family
      cd05136
      Location:342 → 665
      RasGAP_DAB2IP; Ras-GTPase Activating Domain of DAB2IP and similar proteins
      pfam12004
      Location:655 → 1308
      DUF3498; Domain of unknown function (DUF3498)
      cl17171
      Location:72 → 263
      PH-like; Pleckstrin homology-like domain

    12. XM_020050401.3 → XP_019905960.1  ras/Rap GTPase-activating protein SynGAP isoform X4

      UniProtKB/TrEMBL
      A0A3P8YAG4
      Conserved Domains (4) summary
      cd04013
      Location:162 → 308
      C2_SynGAP_like; C2 domain present in Ras GTPase activating protein (GAP) family
      cd05136
      Location:299 → 622
      RasGAP_DAB2IP; Ras-GTPase Activating Domain of DAB2IP and similar proteins
      pfam12004
      Location:612 → 1265
      DUF3498; Domain of unknown function (DUF3498)
      cl17171
      Location:29 → 220
      PH-like; Pleckstrin homology-like domain

    13. XM_020050404.3 → XP_019905963.1  ras/Rap GTPase-activating protein SynGAP isoform X7

      UniProtKB/TrEMBL
      A0A3P8YAG4
      Conserved Domains (4) summary
      cd04013
      Location:138 → 284
      C2_SynGAP_like; C2 domain present in Ras GTPase activating protein (GAP) family
      cd05136
      Location:275 → 598
      RasGAP_DAB2IP; Ras-GTPase Activating Domain of DAB2IP and similar proteins
      pfam12004
      Location:588 → 1241
      DUF3498; Domain of unknown function (DUF3498)
      cl17171
      Location:5 → 196
      PH-like; Pleckstrin homology-like domain

    14. XM_034294767.1 → XP_034150658.1  ras/Rap GTPase-activating protein SynGAP isoform X7

      UniProtKB/TrEMBL
      A0A3P8YAG4
      Conserved Domains (4) summary
      cd04013
      Location:138 → 284
      C2_SynGAP_like; C2 domain present in Ras GTPase activating protein (GAP) family
      cd05136
      Location:275 → 598
      RasGAP_DAB2IP; Ras-GTPase Activating Domain of DAB2IP and similar proteins
      pfam12004
      Location:588 → 1241
      DUF3498; Domain of unknown function (DUF3498)
      cl17171
      Location:5 → 196
      PH-like; Pleckstrin homology-like domain

    15. XM_020050402.3 → XP_019905961.1  ras/Rap GTPase-activating protein SynGAP isoform X5

      UniProtKB/TrEMBL
      A0A3P8YAG4
      Related
      ENSELUP00000012858.2, ENSELUT00000021282.3
      Conserved Domains (4) summary
      cd04013
      Location:160 → 306
      C2_SynGAP_like; C2 domain present in Ras GTPase activating protein (GAP) family
      cd05136
      Location:297 → 620
      RasGAP_DAB2IP; Ras-GTPase Activating Domain of DAB2IP and similar proteins
      pfam12004
      Location:610 → 1263
      DUF3498; Domain of unknown function (DUF3498)
      cl17171
      Location:27 → 218
      PH-like; Pleckstrin homology-like domain

    16. XM_034294768.1 → XP_034150659.1  ras/Rap GTPase-activating protein SynGAP isoform X9

      UniProtKB/TrEMBL
      A0A3P8YAG4
      Related
      ENSELUP00000012815.2, ENSELUT00000038250.3
      Conserved Domains (4) summary
      cd04013
      Location:124 → 270
      C2_SynGAP_like; C2 domain present in Ras GTPase activating protein (GAP) family
      cd05136
      Location:261 → 584
      RasGAP_DAB2IP; Ras-GTPase Activating Domain of DAB2IP and similar proteins
      pfam12004
      Location:574 → 1227
      DUF3498; Domain of unknown function (DUF3498)
      cl17171
      Location:2 → 182
      PH-like; Pleckstrin homology-like domain
    Nucleotide Protein
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