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    LOC117638624 replication protein A 70 kDa DNA-binding subunit B-like [ Prunus dulcis (almond) ]

    Gene ID: 117638624, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC117638624
    Gene description
    replication protein A 70 kDa DNA-binding subunit B-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Prunus dulcis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current ALMONDv2 (GCF_902201215.1) 8 NC_047657.1 (16648323..16650659, complement)

    Chromosome 8 - NC_047657.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117612235 Neighboring gene uncharacterized LOC117638623 Neighboring gene uncharacterized LOC117612236 Neighboring gene membrane protein of ER body-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_047657.1 Chromosome 8 Reference ALMONDv2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in DNA replication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    replication protein A 70 kDa DNA-binding subunit B-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Prunus dulcis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ALMONDv2 Primary Assembly

    Genomic

    1. NC_047657.1 Reference ALMONDv2 Primary Assembly

      Range
      16648323..16650659 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034373720.1 → XP_034229611.1  replication protein A 70 kDa DNA-binding subunit B-like

      UniProtKB/TrEMBL
      A0AAD4UXL9
      Conserved Domains (2) summary
      TIGR00617
      Location:23 → 219
      rpa1; replication factor-a protein 1 (rpa1)
      cl09930
      Location:138 → 247
      RPA_2b-aaRSs_OBF_like; Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with oligonucleotide/oligosaccharide (OB) fold.
    Nucleotide Protein
    Heading Accession and Version

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