U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    HER10_EVM0008087 COPII coat assembly protein SEC16 [ Colletotrichum scovillei ]

    Gene ID: 55982142, updated on 30-Nov-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    HER10_EVM0008087
    Gene description
    COPII coat assembly protein SEC16
    Locus tag
    HER10_EVM0008087
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Colletotrichum scovillei (strain: TJNH1, nat-host: Capsicum annuum)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Glomerellales; Glomerellaceae; Colletotrichum; Colletotrichum acutatum species complex
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See HER10_EVM0008087 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    2

    NW_023336264.1Genomic Context describing neighboring genes Neighboring gene HET domain-containing protein Neighboring gene uncharacterized protein Neighboring gene phospholipid-translocating P-type ATPase Neighboring gene oxidoreductase FAD-binding domain-containing protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_023336264.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genome Sequence Resource for Colletotrichum scovillei, the Cause of Anthracnose Disease of Chili. Huo J, et al. Mol Plant Microbe Interact, 2021 Jan. PMID 33006530
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in COPII vesicle coating IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in Golgi organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in autophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein localization to endoplasmic reticulum exit site IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in ER to Golgi transport vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum exit site IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    COPII coat assembly protein SEC16

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_023336264.1 Reference assembly

      Range
      3827157..3833584 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035477621.1 → XP_035332960.1  COPII coat assembly protein SEC16 [Colletotrichum scovillei]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A9P7RGA1
      Conserved Domains (6) summary
      PTZ00395
      Location:1516 → 1711
      PTZ00395; Sec24-related protein; Provisional
      PHA03247
      Location:458 → 960
      PHA03247; large tegument protein UL36; Provisional
      pfam05109
      Location:14 → 195
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      pfam12935
      Location:279 → 472
      Sec16_N; Vesicle coat trafficking protein Sec16 N-terminus
      pfam12931
      Location:1151 → 1454
      Sec16_C; Sec23-binding domain of Sec16
      pfam12932
      Location:972 → 1090
      Sec16; Vesicle coat trafficking protein Sec16 mid-region
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases