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    LOC117925405 adenylate kinase 5, chloroplastic [ Vitis riparia (riverbank grape) ]

    Gene ID: 117925405, updated on 19-Jun-2024

    Summary

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    Gene symbol
    LOC117925405
    Gene description
    adenylate kinase 5, chloroplastic
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis riparia
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC117925405 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    100 current EGFV_Vit.rip_1.0 (GCF_004353265.1) 11 NC_048441.1 (12877835..12906310, complement)

    Chromosome 11 - NC_048441.1Genomic Context describing neighboring genes Neighboring gene sugar transport protein 7-like Neighboring gene sugar transport protein 7-like Neighboring gene transmembrane 9 superfamily member 11 Neighboring gene uncharacterized LOC117925022

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_048441.1 Chromosome 11 Reference EGFV_Vit.rip_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables (d)CMP kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables adenylate kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleoside diphosphate kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleoside triphosphate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    adenylate kinase 5, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Vitis riparia Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EGFV_Vit.rip_1.0 Primary Assembly

    Genomic

    1. NC_048441.1 Reference EGFV_Vit.rip_1.0 Primary Assembly

      Range
      12877835..12906310 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034844406.1 → XP_034700297.1  adenylate kinase 5, chloroplastic isoform X2

      Conserved Domains (1) summary
      PLN02842
      Location:80 → 507
      PLN02842; nucleotide kinase

    2. XM_034844404.1 → XP_034700295.1  adenylate kinase 5, chloroplastic isoform X1

      Conserved Domains (1) summary
      PLN02842
      Location:80 → 595
      PLN02842; nucleotide kinase
    Nucleotide Protein
    Heading Accession and Version

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