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    LOC117927532 30S ribosomal protein 2, chloroplastic [ Vitis riparia (riverbank grape) ]

    Gene ID: 117927532, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC117927532
    Gene description
    30S ribosomal protein 2, chloroplastic
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis riparia
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC117927532 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    100 current EGFV_Vit.rip_1.0 (GCF_004353265.1) 13 NC_048443.1 (1273735..1277002, complement)

    Chromosome 13 - NC_048443.1Genomic Context describing neighboring genes Neighboring gene thioredoxin-like protein Clot Neighboring gene sister chromatid cohesion 1 protein 3 Neighboring gene FT-interacting protein 3-like Neighboring gene 60S ribosomal protein L6-3-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_048443.1 Chromosome 13 Reference EGFV_Vit.rip_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    30S ribosomal protein 2, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Vitis riparia Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EGFV_Vit.rip_1.0 Primary Assembly

    Genomic

    1. NC_048443.1 Reference EGFV_Vit.rip_1.0 Primary Assembly

      Range
      1273735..1277002 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034847073.1 → XP_034702964.1  30S ribosomal protein 2, chloroplastic

      Conserved Domains (2) summary
      cd21609
      Location:71 → 150
      RRM1_PSRP2_like; RNA recognition motif 1 (RRM1) found in chloroplastic plastid-specific 30S ribosomal protein 2 (PSRP-2) and similar proteins
      cl17169
      Location:168 → 247
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version

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