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    LOC117907392 GDSL esterase/lipase EXL3-like [ Vitis riparia (riverbank grape) ]

    Gene ID: 117907392, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC117907392
    Gene description
    GDSL esterase/lipase EXL3-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis riparia
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC117907392 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    100 current EGFV_Vit.rip_1.0 (GCF_004353265.1) 18 NC_048448.1 (13086483..13088613)

    Chromosome 18 - NC_048448.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117905939 Neighboring gene GDSL esterase/lipase EXL3-like Neighboring gene GDSL esterase/lipase EXL3-like Neighboring gene GDSL esterase/lipase At3g14820-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_048448.1 Chromosome 18 Reference EGFV_Vit.rip_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, acting on ester bonds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    GDSL esterase/lipase EXL3-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Vitis riparia Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EGFV_Vit.rip_1.0 Primary Assembly

    Genomic

    1. NC_048448.1 Reference EGFV_Vit.rip_1.0 Primary Assembly

      Range
      13086483..13088613
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034820922.1 → XP_034676813.1  GDSL esterase/lipase EXL3-like isoform X1

      Conserved Domains (1) summary
      cd01837
      Location:37 → 381
      SGNH_plant_lipase_like; a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its ...

    2. XM_034820923.1 → XP_034676814.1  GDSL esterase/lipase EXL3-like isoform X2

      Conserved Domains (1) summary
      cd01837
      Location:37 → 353
      SGNH_plant_lipase_like; a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its ...
    Nucleotide Protein
    Heading Accession and Version

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