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    LOC118027555 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 [ Populus alba (white poplar) ]

    Gene ID: 118027555, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC118027555
    Gene description
    protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus alba
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC118027555 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    100 current ASM523922v1 (GCF_005239225.1) Unplaced Scaffold NW_023271847.1 (170871..172307, complement)

    NW_023271847.1Genomic Context describing neighboring genes Neighboring gene cinnamoyl-CoA reductase 1 Neighboring gene gamma-interferon-responsive lysosomal thiol protein-like Neighboring gene rab3 GTPase-activating protein catalytic subunit Neighboring gene probable serine/threonine-protein kinase roco5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_023271847 Unplaced Scaffold Reference ASM523922v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in mRNA transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to light stimulus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus alba Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM523922v1 Primary Assembly

    Genomic

    1. NW_023271847.1 Reference ASM523922v1 Primary Assembly

      Range
      170871..172307 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035030930.1 → XP_034886821.1  protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5

      Conserved Domains (1) summary
      pfam04852
      Location:36 → 161
      DUF640; Protein of unknown function (DUF640)
    Nucleotide Protein
    Heading Accession and Version

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