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    LOC118033208 OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 11-like [ Populus alba (white poplar) ]

    Gene ID: 118033208, updated on 14-Dec-2024

    Summary

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    Gene symbol
    LOC118033208
    Gene description
    OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 11-like
    Locus tag
    D5086_0000207370
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus alba
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC118033208 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    100 current ASM523922v1 (GCF_005239225.1) Unplaced Scaffold NW_023272008.1 (17263..21516)

    NW_023272008.1Genomic Context describing neighboring genes Neighboring gene putative F-box/LRR-repeat protein 23 Neighboring gene heat shock 70 kDa protein 17-like Neighboring gene pentatricopeptide repeat-containing protein At4g02750-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_023272008 Unplaced Scaffold Reference ASM523922v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 11-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus alba Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM523922v1 Primary Assembly

    Genomic

    1. NW_023272008.1 Reference ASM523922v1 Primary Assembly

      Range
      17263..21516
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035038103.1 → XP_034893994.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 11-like isoform X1

      UniProtKB/TrEMBL
      A0A4U5PLV9
      Conserved Domains (1) summary
      cl19932
      Location:94 → 178
      OTU; OTU-like cysteine protease

    2. XM_035038104.1 → XP_034893995.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 11-like isoform X2

      UniProtKB/TrEMBL
      A0A4U5PLV9
      Conserved Domains (1) summary
      cl19932
      Location:94 → 178
      OTU; OTU-like cysteine protease

    3. XM_035038106.1 → XP_034893997.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 11-like isoform X3

      Conserved Domains (1) summary
      cl19932
      Location:94 → 164
      OTU; OTU-like cysteine protease

    4. XM_035038105.1 → XP_034893996.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 11-like isoform X3

      Conserved Domains (1) summary
      cl19932
      Location:94 → 164
      OTU; OTU-like cysteine protease

    5. XM_035038107.1 → XP_034893998.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 11-like isoform X1

      UniProtKB/TrEMBL
      A0A4U5PLV9
      Conserved Domains (1) summary
      cl19932
      Location:94 → 178
      OTU; OTU-like cysteine protease
    Nucleotide Protein
    Heading Accession and Version

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