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    STAT1 signal transducer and activator of transcription 1 [ Oxyura jamaicensis (ruddy duck) ]

    Gene ID: 118169537, updated on 11-Apr-2024

    Summary

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    Gene symbol
    STAT1
    Gene description
    signal transducer and activator of transcription 1
    See related
    EnsemblRapid:ENSOJMG00000003553
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oxyura jamaicensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Oxyura
    Orthologs
    human mouse all
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    Genomic context

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    See STAT1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    100 current BPBGC_Ojam_1.0 (GCF_011077185.1) 7 NC_048899.1 (3724853..3747342)

    Chromosome 7 - NC_048899.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118169543 Neighboring gene signal transducer and activator of transcription 4 Neighboring gene glutaminase Neighboring gene uncharacterized LOC118169542

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_048899.1 Chromosome 7 Reference BPBGC_Ojam_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell surface receptor signaling pathway via JAK-STAT IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in defense response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cell population proliferation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to peptide hormone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in type I interferon-mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    signal transducer and activator of transcription 1-alpha/beta

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oxyura jamaicensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference BPBGC_Ojam_1.0

    Genomic

    1. NC_048899.1 Reference BPBGC_Ojam_1.0

      Range
      3724853..3747342
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035330863.1 → XP_035186754.1  signal transducer and activator of transcription 1-alpha/beta isoform X1

      Related
      ENSOJMP00000005937.1, ENSOJMT00000006045.1
      Conserved Domains (5) summary
      cd10372
      Location:587 → 735
      SH2_STAT1; Src homology 2 (SH2) domain found in signal transducer and activator of transcription (STAT) 1 proteins
      smart00964
      Location:28 → 146
      STAT_int; STAT protein, protein interaction domain
      cd16851
      Location:166 → 341
      STAT1_CCD; Coiled-coil domain of Signal Transducer and Activator of Transcription 1 (STAT1)
      cd16845
      Location:345 → 505
      STAT1_DBD; DNA-binding domain of Signal Transducer and Activator of Transcription 1 (STAT1)
      pfam12162
      Location:743 → 767
      STAT1_TAZ2bind; STAT1 TAZ2 binding domain

    2. XM_035330865.1 → XP_035186756.1  signal transducer and activator of transcription 1-alpha/beta isoform X2

      Conserved Domains (5) summary
      cd10372
      Location:587 → 735
      SH2_STAT1; Src homology 2 (SH2) domain found in signal transducer and activator of transcription (STAT) 1 proteins
      smart00964
      Location:28 → 146
      STAT_int; STAT protein, protein interaction domain
      cd16851
      Location:166 → 341
      STAT1_CCD; Coiled-coil domain of Signal Transducer and Activator of Transcription 1 (STAT1)
      cd16845
      Location:345 → 505
      STAT1_DBD; DNA-binding domain of Signal Transducer and Activator of Transcription 1 (STAT1)
      pfam12162
      Location:743 → 765
      STAT1_TAZ2bind; STAT1 TAZ2 binding domain
    Nucleotide Protein
    Heading Accession and Version

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