U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC118232160 plexin-B2-like [ Anguilla anguilla (European eel) ]

    Gene ID: 118232160, updated on 22-Oct-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC118232160
    Gene description
    plexin-B2-like
    See related
    EnsemblRapid:ENSAANG00010004444
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anguilla anguilla
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Anguilliformes; Anguillidae; Anguilla
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC118232160 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    39
    Annotation release Status Assembly Chr Location
    100 current fAngAng1.pri (GCF_013347855.1) 7 NC_049207.1 (47022329..47130230)

    Chromosome 7 - NC_049207.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118232601 Neighboring gene U4 spliceosomal RNA Neighboring gene U4 spliceosomal RNA Neighboring gene DCC-interacting protein 13-beta-like Neighboring gene overexpressed in colon carcinoma 1 protein homolog

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_049207.1 Chromosome 7 Reference fAngAng1.pri Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables semaphorin receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of axonogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cell shape IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in semaphorin-plexin signaling pathway involved in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of semaphorin receptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    plexin-B2-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Anguilla anguilla Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fAngAng1.pri Primary Assembly

    Genomic

    1. NC_049207.1 Reference fAngAng1.pri Primary Assembly

      Range
      47022329..47130230
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035426824.1 → XP_035282715.1  plexin-B2-like isoform X2

      Related
      ENSAANP00010015582.1, ENSAANT00010016298.1
      Conserved Domains (7) summary
      cd12792
      Location:1310 → 1875
      RasGAP_plexin_B2; Ras-GTPase Activating Domain of plexin-B2
      smart00423
      Location:802 → 837
      PSI; domain found in Plexins, Semaphorins and Integrins
      smart00429
      Location:940 → 1005
      IPT; ig-like, plexins, transcription factors
      pfam01437
      Location:508 → 552
      PSI; Plexin repeat
      pfam17960
      Location:564 → 652
      TIG_plexin; TIG domain
      cl15674
      Location:848 → 909
      IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
      cl15693
      Location:47 → 506
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

    2. XM_035426825.1 → XP_035282716.1  plexin-B2-like isoform X2

      Conserved Domains (7) summary
      cd12792
      Location:1310 → 1875
      RasGAP_plexin_B2; Ras-GTPase Activating Domain of plexin-B2
      smart00423
      Location:802 → 837
      PSI; domain found in Plexins, Semaphorins and Integrins
      smart00429
      Location:940 → 1005
      IPT; ig-like, plexins, transcription factors
      pfam01437
      Location:508 → 552
      PSI; Plexin repeat
      pfam17960
      Location:564 → 652
      TIG_plexin; TIG domain
      cl15674
      Location:848 → 909
      IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
      cl15693
      Location:47 → 506
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

    3. XM_035426823.1 → XP_035282714.1  plexin-B2-like isoform X1

      Related
      ENSAANP00010015776.1, ENSAANT00010016504.1
      Conserved Domains (7) summary
      cd12792
      Location:1325 → 1890
      RasGAP_plexin_B2; Ras-GTPase Activating Domain of plexin-B2
      smart00423
      Location:817 → 852
      PSI; domain found in Plexins, Semaphorins and Integrins
      smart00429
      Location:955 → 1020
      IPT; ig-like, plexins, transcription factors
      pfam01437
      Location:523 → 567
      PSI; Plexin repeat
      pfam17960
      Location:579 → 667
      TIG_plexin; TIG domain
      cl15674
      Location:863 → 924
      IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
      cl15693
      Location:62 → 521
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases