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    PKD2L1 polycystin 2 like 1, transient receptor potential cation channel [ Canis lupus dingo (dingo) ]

    Gene ID: 112672193, updated on 15-Mar-2024

    Summary

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    Gene symbol
    PKD2L1
    Gene description
    polycystin 2 like 1, transient receptor potential cation channel
    See related
    Ensembl:ENSCAFG00020008288
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus dingo (sub-species: dingo)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See PKD2L1 in Genome Data Viewer
    Location:
    chromosome: 28
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    102 current ASM325472v2 (GCF_003254725.2) 28 NC_064270.1 (13165837..13196163, complement)
    101 previous assembly UNSW_AlpineDingo_1.0 (GCF_012295265.1) 28 Unlocalized Scaffold NW_023365220.1 (13510908..13541184, complement)

    Chromosome 28 - NC_064270.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA12 Neighboring gene CWF19 like cell cycle control factor 1 Neighboring gene uncharacterized LOC112672194 Neighboring gene biogenesis of lysosomal organelles complex 1 subunit 2 Neighboring gene stearoyl-CoA desaturase Neighboring gene uncharacterized LOC112672196

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium-activated potassium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables muscle alpha-actinin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sodium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in detection of mechanical stimulus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in potassium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polycystic kidney disease 2-like 1 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus dingo Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM325472v2

    Genomic

    1. NC_064270.1 Reference ASM325472v2

      Range
      13165837..13196163 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025466896.3 → XP_025322681.1  polycystic kidney disease 2-like 1 protein isoform X1

      UniProtKB/TrEMBL
      A0A8C0T5V6, A0A8I3P573
      Related
      ENSCAFP00020010246.1
      Conserved Domains (2) summary
      pfam08016
      Location:147 → 567
      PKD_channel; Polycystin cation channel
      pfam18109
      Location:702 → 736
      Fer4_24; Ferredoxin I 4Fe-4S cluster domain

    2. XM_035707882.2 → XP_035563775.1  polycystic kidney disease 2-like 1 protein isoform X2

      UniProtKB/TrEMBL
      A0A8C0T5V6, A0A8I3P573
      Conserved Domains (2) summary
      pfam08016
      Location:147 → 567
      PKD_channel; Polycystin cation channel
      pfam18109
      Location:702 → 736
      Fer4_24; Ferredoxin I 4Fe-4S cluster domain
    Nucleotide Protein
    Heading Accession and Version

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