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    LOC118420626 far upstream element-binding protein 1-like [ Branchiostoma floridae (Florida lancelet) ]

    Gene ID: 118420626, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC118420626
    Gene description
    far upstream element-binding protein 1-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Branchiostoma floridae
    Lineage
    Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii; Amphioxiformes; Branchiostomatidae; Branchiostoma
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    Genomic context

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    See LOC118420626 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    100 current Bfl_VNyyK (GCF_000003815.2) 8 NC_049986.1 (6974483..6992799, complement)

    Chromosome 8 - NC_049986.1Genomic Context describing neighboring genes Neighboring gene neural proliferation differentiation and control protein 1-like Neighboring gene RING finger protein 151-like Neighboring gene uncharacterized LOC118420628 Neighboring gene small nucleolar RNA SNORA62/SNORA6 family Neighboring gene small nucleolar RNA SNORA62/SNORA6 family Neighboring gene 2-aminoadipate transaminase-like Neighboring gene UPF0428 protein CXorf56 homolog

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_049986.1 Chromosome 8 Reference Bfl_VNyyK Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Conserved Noncoding Elements in the Most Distant Genera of Cephalochordates: The Goldilocks Principle. Yue JX, et al. Genome Biol Evol, 2016 Aug 25. PMID 27412606, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    far upstream element-binding protein 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Branchiostoma floridae Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Bfl_VNyyK Primary Assembly

    Genomic

    1. NC_049986.1 Reference Bfl_VNyyK Primary Assembly

      Range
      6974483..6992799 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035827485.1 → XP_035683378.1  far upstream element-binding protein 1-like isoform X15

      UniProtKB/TrEMBL
      A0A9J7LKE8, C3ZCP6
      Conserved Domains (4) summary
      cd22396
      Location:76 → 143
      KH-I_FUBP_rpt1; first type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22397
      Location:165 → 233
      KH-I_FUBP_rpt2; second type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22398
      Location:276 → 341
      KH-I_FUBP_rpt3; third type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22399
      Location:392 → 460
      KH-I_FUBP_rpt4; fourth type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins

    2. XM_035827484.1 → XP_035683377.1  far upstream element-binding protein 1-like isoform X14

      UniProtKB/TrEMBL
      A0A9J7LIC4, C3ZCP6
      Conserved Domains (4) summary
      cd22396
      Location:82 → 149
      KH-I_FUBP_rpt1; first type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22397
      Location:171 → 239
      KH-I_FUBP_rpt2; second type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22398
      Location:279 → 344
      KH-I_FUBP_rpt3; third type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22399
      Location:395 → 463
      KH-I_FUBP_rpt4; fourth type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins

    3. XM_035827483.1 → XP_035683376.1  far upstream element-binding protein 1-like isoform X13

      UniProtKB/TrEMBL
      A0A9J7MX93, C3ZCP6
      Conserved Domains (4) summary
      cd22396
      Location:82 → 149
      KH-I_FUBP_rpt1; first type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22397
      Location:171 → 239
      KH-I_FUBP_rpt2; second type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22398
      Location:282 → 347
      KH-I_FUBP_rpt3; third type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22399
      Location:398 → 466
      KH-I_FUBP_rpt4; fourth type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins

    4. XM_035827481.1 → XP_035683374.1  far upstream element-binding protein 1-like isoform X11

      UniProtKB/TrEMBL
      A0A9J7MYI8, C3ZCP6
      Conserved Domains (4) summary
      cd22396
      Location:90 → 157
      KH-I_FUBP_rpt1; first type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22397
      Location:179 → 247
      KH-I_FUBP_rpt2; second type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22398
      Location:290 → 355
      KH-I_FUBP_rpt3; third type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22399
      Location:406 → 474
      KH-I_FUBP_rpt4; fourth type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins

    5. XM_035827478.1 → XP_035683371.1  far upstream element-binding protein 1-like isoform X8

      UniProtKB/TrEMBL
      A0A9J7MYH9, C3ZCP6
      Conserved Domains (4) summary
      cd22396
      Location:96 → 163
      KH-I_FUBP_rpt1; first type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22397
      Location:185 → 253
      KH-I_FUBP_rpt2; second type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22398
      Location:296 → 361
      KH-I_FUBP_rpt3; third type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22399
      Location:412 → 480
      KH-I_FUBP_rpt4; fourth type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins

    6. XM_035827480.1 → XP_035683373.1  far upstream element-binding protein 1-like isoform X10

      UniProtKB/TrEMBL
      A0A9J7LJL9, C3ZCP6
      Conserved Domains (4) summary
      cd22396
      Location:91 → 158
      KH-I_FUBP_rpt1; first type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22397
      Location:180 → 248
      KH-I_FUBP_rpt2; second type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22398
      Location:291 → 356
      KH-I_FUBP_rpt3; third type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22399
      Location:407 → 475
      KH-I_FUBP_rpt4; fourth type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins

    7. XM_035827474.1 → XP_035683367.1  far upstream element-binding protein 1-like isoform X5

      UniProtKB/TrEMBL
      A0A9J7LIZ9, C3ZCP6
      Conserved Domains (4) summary
      cd22396
      Location:97 → 164
      KH-I_FUBP_rpt1; first type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22397
      Location:186 → 254
      KH-I_FUBP_rpt2; second type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22398
      Location:297 → 362
      KH-I_FUBP_rpt3; third type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22399
      Location:413 → 481
      KH-I_FUBP_rpt4; fourth type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins

    8. XM_035827473.1 → XP_035683366.1  far upstream element-binding protein 1-like isoform X4

      UniProtKB/TrEMBL
      A0A9J7LI46, C3ZCP6
      Conserved Domains (4) summary
      cd22396
      Location:105 → 172
      KH-I_FUBP_rpt1; first type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22397
      Location:194 → 262
      KH-I_FUBP_rpt2; second type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22398
      Location:305 → 370
      KH-I_FUBP_rpt3; third type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22399
      Location:421 → 489
      KH-I_FUBP_rpt4; fourth type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins

    9. XM_035827471.1 → XP_035683364.1  far upstream element-binding protein 1-like isoform X2

      UniProtKB/TrEMBL
      A0A9J7LI33, C3ZCP6
      Conserved Domains (4) summary
      cd22396
      Location:111 → 178
      KH-I_FUBP_rpt1; first type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22397
      Location:200 → 268
      KH-I_FUBP_rpt2; second type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22398
      Location:308 → 373
      KH-I_FUBP_rpt3; third type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22399
      Location:424 → 492
      KH-I_FUBP_rpt4; fourth type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins

    10. XM_035827487.1 → XP_035683380.1  far upstream element-binding protein 1-like isoform X16

      UniProtKB/TrEMBL
      A0A9J7LKG2, C3ZCP6
      Conserved Domains (4) summary
      cd22396
      Location:111 → 178
      KH-I_FUBP_rpt1; first type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22397
      Location:200 → 268
      KH-I_FUBP_rpt2; second type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22398
      Location:311 → 376
      KH-I_FUBP_rpt3; third type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22399
      Location:412 → 480
      KH-I_FUBP_rpt4; fourth type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins

    11. XM_035827476.1 → XP_035683369.1  far upstream element-binding protein 1-like isoform X6

      UniProtKB/TrEMBL
      A0A9J7LJS3, C3ZCP6
      Conserved Domains (4) summary
      cd22396
      Location:111 → 178
      KH-I_FUBP_rpt1; first type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22397
      Location:200 → 268
      KH-I_FUBP_rpt2; second type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22398
      Location:311 → 376
      KH-I_FUBP_rpt3; third type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22399
      Location:412 → 480
      KH-I_FUBP_rpt4; fourth type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins

    12. XM_035827479.1 → XP_035683372.1  far upstream element-binding protein 1-like isoform X9

      UniProtKB/TrEMBL
      A0A9J7MVW6, C3ZCP6
      Conserved Domains (4) summary
      cd22396
      Location:111 → 178
      KH-I_FUBP_rpt1; first type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22397
      Location:200 → 268
      KH-I_FUBP_rpt2; second type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22398
      Location:311 → 376
      KH-I_FUBP_rpt3; third type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22399
      Location:427 → 495
      KH-I_FUBP_rpt4; fourth type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins

    13. XM_035827472.1 → XP_035683365.1  far upstream element-binding protein 1-like isoform X3

      UniProtKB/TrEMBL
      A0A9J7LKF0, C3ZCP6
      Conserved Domains (4) summary
      cd22396
      Location:111 → 178
      KH-I_FUBP_rpt1; first type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22397
      Location:200 → 268
      KH-I_FUBP_rpt2; second type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22398
      Location:311 → 376
      KH-I_FUBP_rpt3; third type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22399
      Location:427 → 495
      KH-I_FUBP_rpt4; fourth type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins

    14. XM_035827488.1 → XP_035683381.1  far upstream element-binding protein 1-like isoform X17

      UniProtKB/TrEMBL
      A0A9J7LI56, C3ZCP6
      Conserved Domains (4) summary
      cd22396
      Location:111 → 178
      KH-I_FUBP_rpt1; first type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22397
      Location:200 → 268
      KH-I_FUBP_rpt2; second type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22398
      Location:311 → 376
      KH-I_FUBP_rpt3; third type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22399
      Location:427 → 495
      KH-I_FUBP_rpt4; fourth type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins

    15. XM_035827477.1 → XP_035683370.1  far upstream element-binding protein 1-like isoform X7

      UniProtKB/TrEMBL
      A0A9J7LKB9, C3ZCP6
      Conserved Domains (4) summary
      cd22396
      Location:111 → 178
      KH-I_FUBP_rpt1; first type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22397
      Location:200 → 268
      KH-I_FUBP_rpt2; second type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22398
      Location:311 → 376
      KH-I_FUBP_rpt3; third type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22399
      Location:427 → 495
      KH-I_FUBP_rpt4; fourth type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins

    16. XM_035827482.1 → XP_035683375.1  far upstream element-binding protein 1-like isoform X12

      UniProtKB/TrEMBL
      A0A9J7MYD8, C3ZCP6
      Conserved Domains (4) summary
      cd22396
      Location:111 → 178
      KH-I_FUBP_rpt1; first type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22397
      Location:200 → 268
      KH-I_FUBP_rpt2; second type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22398
      Location:311 → 376
      KH-I_FUBP_rpt3; third type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22399
      Location:427 → 495
      KH-I_FUBP_rpt4; fourth type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins

    17. XM_035827470.1 → XP_035683363.1  far upstream element-binding protein 1-like isoform X1

      UniProtKB/TrEMBL
      A0A9J7LKD9, C3ZCP6
      Conserved Domains (4) summary
      cd22396
      Location:111 → 178
      KH-I_FUBP_rpt1; first type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22397
      Location:200 → 268
      KH-I_FUBP_rpt2; second type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22398
      Location:311 → 376
      KH-I_FUBP_rpt3; third type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
      cd22399
      Location:427 → 495
      KH-I_FUBP_rpt4; fourth type I K homology (KH) RNA-binding domain found in the FUBP family RNA/DNA-binding proteins
    Nucleotide Protein Strain
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