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    Rd3l retinal degeneration 3-like [ Mus musculus (house mouse) ]

    Gene ID: 217874, updated on 9-Dec-2024

    Summary

    Official Symbol
    Rd3lprovided by MGI
    Official Full Name
    retinal degeneration 3-likeprovided by MGI
    Primary source
    MGI:MGI:2675860
    See related
    Ensembl:ENSMUSG00000091402 AllianceGenome:MGI:2675860
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    A930011N13
    Summary
    Orthologous to human RD3L (RD3 like). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Low expression observed in reference dataset See more
    Orthologs
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    Genomic context

    See Rd3l in Genome Data Viewer
    Location:
    12 F1; 12 61.14 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (111945625..111947751, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (111979191..111981317, complement)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 36757 Neighboring gene STARR-positive B cell enhancer ABC_E8504 Neighboring gene ATP synthase membrane subunit j Neighboring gene tudor domain containing 9 Neighboring gene predicted gene, 46381 Neighboring gene microRNA 3073a Neighboring gene microRNA 3073b Neighboring gene asparaginase

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001127685.1NP_001121157.1  protein RD3-like

      See identical proteins and their annotated locations for NP_001121157.1

      Status: PROVISIONAL

      Source sequence(s)
      BC147034
      Consensus CDS
      CCDS49185.1
      UniProtKB/TrEMBL
      B2RV38
      Related
      ENSMUSP00000140410.2, ENSMUST00000190536.2
      Conserved Domains (1) summary
      pfam14473
      Location:16129
      RD3; RD3 protein

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      111945625..111947751 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006515764.2XP_006515827.1  protein RD3-like isoform X1

      See identical proteins and their annotated locations for XP_006515827.1

      UniProtKB/TrEMBL
      B2RV38
      Related
      ENSMUSP00000140454.2, ENSMUST00000189759.7
      Conserved Domains (1) summary
      pfam14473
      Location:16129
      RD3; RD3 protein