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    lin1 U5 snRNP complex subunit LIN1 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2541061, updated on 18-Sep-2024

    Summary

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    Official Symbol
    lin1
    Official Full Name
    U5 snRNP complex subunit LIN1
    Primary source
    PomBase:SPBC83.09c
    Locus tag
    SPOM_SPBC83.09C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Also known as
    snu40
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    Genomic context

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    See lin1 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    2
    Sequence:
    Chromosome: II; NC_003423.3 (1525577..1527116, complement)

    Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Lid2 complex histone demethylase H3-K36 subunit Jmj3 Neighboring gene ncRNA Neighboring gene chaperone, AAA family ATPase Rvb2 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene protein Emc7 Neighboring gene ncRNA Neighboring gene triose phosphate transmembrane transporter

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003423.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The histone variant H2A.Z promotes splicing of weak introns. Nissen KE, et al. Genes Dev, 2017 Apr 1. PMID 28446597, Free PMC Article
    2. Large scale screening of genetic interaction with sgf73(+) in fission yeast. Guo Y, et al. Yi Chuan, 2014 Jul. PMID 25076038
    3. A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human. Vo TV, et al. Cell, 2016 Jan 14. PMID 26771498, Free PMC Article
    4. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
    5. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in spliceosomal tri-snRNP complex assembly ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    part_of U5 snRNP IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    U5 snRNP complex subunit LIN1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003423.3 Reference assembly

      Range
      1525577..1527116 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001021535.3 → NP_595641.1  U5 snRNP complex subunit LIN1 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_595641.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O94693
      Conserved Domains (1) summary
      smart00444
      Location:343 → 401
      GYF; Contains conserved Gly-Tyr-Phe residues
    Nucleotide Protein
    Heading Accession and Version

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