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    LOC106623142 lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog [ Bactrocera oleae (olive fruit fly) ]

    Gene ID: 106623142, updated on 10-May-2024

    Summary

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    Gene symbol
    LOC106623142
    Gene description
    lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bactrocera oleae
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Tephritoidea; Tephritidae; Bactrocera; Daculus
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC106623142 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    101 current MU_Boleae_v2 (GCF_001188975.3) Unplaced Scaffold NW_021656638.1 (8400906..8404691, complement)
    100 previous assembly gapfilled_joined_lt9474.gt500.covgt10 (GCF_001188975.1) Unplaced Scaffold NW_013582165.1 (42243..46131)

    NW_021656638.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118680903 Neighboring gene uncharacterized LOC106626385 Neighboring gene lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog Neighboring gene lipopolysaccharide-induced tumor necrosis factor-alpha factor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of the Olive Fruit Fly Bactrocera oleae Transcriptome and Phylogenetic Classification of the Major Detoxification Gene Families. Pavlidi N, et al. PLoS One, 2013. PMID 23824998, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Bactrocera oleae Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MU_Boleae_v2 Primary Assembly

    Genomic

    1. NW_021656638.1 Reference MU_Boleae_v2 Primary Assembly

      Range
      8400906..8404691 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014242553.2 → XP_014098028.2  lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog

      Conserved Domains (2) summary
      PRK10263
      Location:66 → 176
      PRK10263; DNA translocase FtsK; Provisional
      pfam10601
      Location:153 → 222
      zf-LITAF-like; LITAF-like zinc ribbon domain

    2. XM_014242552.2 → XP_014098027.2  lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog

      Conserved Domains (2) summary
      PRK10263
      Location:66 → 176
      PRK10263; DNA translocase FtsK; Provisional
      pfam10601
      Location:153 → 222
      zf-LITAF-like; LITAF-like zinc ribbon domain

    3. XM_036362910.1 → XP_036218803.1  lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog

      Conserved Domains (2) summary
      PRK10263
      Location:66 → 176
      PRK10263; DNA translocase FtsK; Provisional
      pfam10601
      Location:153 → 222
      zf-LITAF-like; LITAF-like zinc ribbon domain

    RNA

    1. XR_004976552.1 RNA Sequence

    2. XR_004976551.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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