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    TOM1L1 target of myb1 like 1 membrane trafficking protein [ Molothrus ater ]

    Gene ID: 118693783, updated on 3-Aug-2024

    Summary

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    Gene symbol
    TOM1L1
    Gene description
    target of myb1 like 1 membrane trafficking protein
    See related
    EnsemblRapid:ENSMRTG00000002825
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Molothrus ater
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Icteridae; Molothrus
    Orthologs
    human mouse all
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    Genomic context

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    See TOM1L1 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2023_03 current BPBGC_Mater_1.1 (GCF_012460135.2) 19 NC_050496.2 (7715585..7740444)
    100 previous assembly BPBGC_Mater_1.0 (GCF_012460135.1) 18 NC_050495.1 (7543024..7567883)

    Chromosome 19 - NC_050496.2Genomic Context describing neighboring genes Neighboring gene carbonic anhydrase 10 Neighboring gene uncharacterized LOC118693856 Neighboring gene cytochrome c oxidase assembly protein COX11, mitochondrial Neighboring gene syntaxin binding protein 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables clathrin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TOM1-like protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_012460135.2-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference BPBGC_Mater_1.1 Primary Assembly

    Genomic

    1. NC_050496.2 Reference BPBGC_Mater_1.1 Primary Assembly

      Range
      7715585..7740444
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036394632.1 → XP_036250525.1  TOM1-like protein 1 isoform X3

      Conserved Domains (2) summary
      cd14237
      Location:163 → 254
      GAT_TM1L1; canonical GAT domain found in target of Myb-like protein 1 (Tom1L1)
      cl02544
      Location:1 → 115
      VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily

    2. XM_036394630.2 → XP_036250523.1  TOM1-like protein 1 isoform X1

      Conserved Domains (2) summary
      cd16997
      Location:95 → 225
      VHS_Tom1L1; VHS (Vps27/Hrs/STAM) domain of TOM1-like protein 1
      cd14237
      Location:273 → 364
      GAT_TM1L1; canonical GAT domain found in target of Myb-like protein 1 (Tom1L1)

    3. XM_036394631.1 → XP_036250524.1  TOM1-like protein 1 isoform X2

      Related
      ENSMRTP00000003897.1, ENSMRTT00000004057.1
      Conserved Domains (2) summary
      cd16997
      Location:14 → 150
      VHS_Tom1L1; VHS (Vps27/Hrs/STAM) domain of TOM1-like protein 1
      cd14237
      Location:198 → 289
      GAT_TM1L1; canonical GAT domain found in target of Myb-like protein 1 (Tom1L1)
    Nucleotide Protein
    Heading Accession and Version

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