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    NEO1 neogenin 1 [ Pipistrellus kuhlii (Kuhl's pipistrelle) ]

    Gene ID: 118729200, updated on 10-Oct-2024

    Summary

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    Gene symbol
    NEO1
    Gene description
    neogenin 1
    Locus tag
    mPipKuh1_012289
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pipistrellus kuhlii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Pipistrellus
    Orthologs
    human mouse all
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    Genomic context

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    See NEO1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    101 current mPipKuh1.p (GCF_014108245.1) Unplaced Scaffold NW_023425404.1 (90323617..90663097, complement)

    NW_023425404.1Genomic Context describing neighboring genes Neighboring gene calcium-binding and coiled-coil domain-containing protein 2-like Neighboring gene hyperpolarization activated cyclic nucleotide gated potassium channel 4 Neighboring gene U2 spliceosomal RNA Neighboring gene ferritin light chain-like Neighboring gene ferritin light chain-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_023425404 Unplaced Scaffold Reference mPipKuh1.p

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    neogenin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pipistrellus kuhlii Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mPipKuh1.p

    Genomic

    1. NW_023425404.1 Reference mPipKuh1.p

      Range
      90323617..90663097 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036456552.2 → XP_036312445.1  neogenin isoform X1

      UniProtKB/TrEMBL
      A0A7J8B2Z6, A0A7J8B3T6
      Conserved Domains (9) summary
      smart00060
      Location:759 → 838
      FN3; Fibronectin type 3 domain
      cd00063
      Location:559 → 648
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:656 → 741
      fn3; Fibronectin type III domain
      pfam06583
      Location:1178 → 1481
      Neogenin_C; Neogenin C-terminus
      pfam07679
      Location:250 → 337
      I-set; Immunoglobulin I-set domain
      cd00096
      Location:252 → 255
      Ig; Ig strand A [structural motif]
      cd05722
      Location:52 → 148
      IgI_1_Neogenin_like; First immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cd05723
      Location:344 → 427
      IgI_4_Neogenin_like; Fourth immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cl11960
      Location:152 → 239
      Ig; Immunoglobulin domain

    2. XM_045587162.1 → XP_045443118.1  neogenin isoform X10

    3. XM_036456618.2 → XP_036312511.1  neogenin isoform X9

      UniProtKB/TrEMBL
      A0A7J8B3T6
      Conserved Domains (9) summary
      smart00060
      Location:739 → 818
      FN3; Fibronectin type 3 domain
      cd00063
      Location:539 → 628
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:636 → 721
      fn3; Fibronectin type III domain
      pfam06583
      Location:1158 → 1408
      Neogenin_C; Neogenin C-terminus
      pfam07679
      Location:250 → 337
      I-set; Immunoglobulin I-set domain
      cd00096
      Location:252 → 255
      Ig; Ig strand A [structural motif]
      cd05722
      Location:52 → 148
      IgI_1_Neogenin_like; First immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cd05723
      Location:344 → 427
      IgI_4_Neogenin_like; Fourth immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cl11960
      Location:152 → 239
      Ig; Immunoglobulin domain

    4. XM_036456600.2 → XP_036312493.1  neogenin isoform X7

      UniProtKB/TrEMBL
      A0A7J8B3T6
      Conserved Domains (9) summary
      smart00060
      Location:759 → 838
      FN3; Fibronectin type 3 domain
      cd00063
      Location:559 → 648
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:656 → 741
      fn3; Fibronectin type III domain
      pfam06583
      Location:1142 → 1445
      Neogenin_C; Neogenin C-terminus
      pfam07679
      Location:250 → 337
      I-set; Immunoglobulin I-set domain
      cd00096
      Location:252 → 255
      Ig; Ig strand A [structural motif]
      cd05722
      Location:52 → 148
      IgI_1_Neogenin_like; First immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cd05723
      Location:344 → 427
      IgI_4_Neogenin_like; Fourth immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cl11960
      Location:152 → 239
      Ig; Immunoglobulin domain

    5. XM_036456609.2 → XP_036312502.1  neogenin isoform X8

      UniProtKB/TrEMBL
      A0A7J8B3T6
      Conserved Domains (9) summary
      smart00060
      Location:759 → 838
      FN3; Fibronectin type 3 domain
      cd00063
      Location:559 → 648
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:656 → 741
      fn3; Fibronectin type III domain
      pfam06583
      Location:1178 → 1428
      Neogenin_C; Neogenin C-terminus
      pfam07679
      Location:250 → 337
      I-set; Immunoglobulin I-set domain
      cd00096
      Location:252 → 255
      Ig; Ig strand A [structural motif]
      cd05722
      Location:52 → 148
      IgI_1_Neogenin_like; First immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cd05723
      Location:344 → 427
      IgI_4_Neogenin_like; Fourth immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cl11960
      Location:152 → 239
      Ig; Immunoglobulin domain

    6. XM_036456573.2 → XP_036312466.1  neogenin isoform X4

      UniProtKB/TrEMBL
      A0A7J8B3B9, A0A7J8B3T6
      Conserved Domains (9) summary
      smart00060
      Location:739 → 818
      FN3; Fibronectin type 3 domain
      cd00063
      Location:539 → 628
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:636 → 721
      fn3; Fibronectin type III domain
      pfam06583
      Location:1158 → 1461
      Neogenin_C; Neogenin C-terminus
      pfam07679
      Location:250 → 337
      I-set; Immunoglobulin I-set domain
      cd00096
      Location:252 → 255
      Ig; Ig strand A [structural motif]
      cd05722
      Location:52 → 148
      IgI_1_Neogenin_like; First immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cd05723
      Location:344 → 427
      IgI_4_Neogenin_like; Fourth immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cl11960
      Location:152 → 239
      Ig; Immunoglobulin domain

    7. XM_036456592.2 → XP_036312485.1  neogenin isoform X6

      UniProtKB/TrEMBL
      A0A7J8B3T6
      Conserved Domains (9) summary
      smart00060
      Location:739 → 818
      FN3; Fibronectin type 3 domain
      cd00063
      Location:539 → 628
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:636 → 721
      fn3; Fibronectin type III domain
      pfam06583
      Location:1147 → 1450
      Neogenin_C; Neogenin C-terminus
      pfam07679
      Location:250 → 337
      I-set; Immunoglobulin I-set domain
      cd00096
      Location:252 → 255
      Ig; Ig strand A [structural motif]
      cd05722
      Location:52 → 148
      IgI_1_Neogenin_like; First immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cd05723
      Location:344 → 427
      IgI_4_Neogenin_like; Fourth immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cl11960
      Location:152 → 239
      Ig; Immunoglobulin domain

    8. XM_036456566.2 → XP_036312459.1  neogenin isoform X3

      UniProtKB/TrEMBL
      A0A7J8B3T6
      Conserved Domains (9) summary
      smart00060
      Location:759 → 838
      FN3; Fibronectin type 3 domain
      cd00063
      Location:559 → 648
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:656 → 741
      fn3; Fibronectin type III domain
      pfam06583
      Location:1162 → 1465
      Neogenin_C; Neogenin C-terminus
      pfam07679
      Location:250 → 337
      I-set; Immunoglobulin I-set domain
      cd00096
      Location:252 → 255
      Ig; Ig strand A [structural motif]
      cd05722
      Location:52 → 148
      IgI_1_Neogenin_like; First immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cd05723
      Location:344 → 427
      IgI_4_Neogenin_like; Fourth immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cl11960
      Location:152 → 239
      Ig; Immunoglobulin domain

    9. XM_036456559.2 → XP_036312452.1  neogenin isoform X2

      UniProtKB/TrEMBL
      A0A7J8B3T6
      Conserved Domains (9) summary
      smart00060
      Location:759 → 838
      FN3; Fibronectin type 3 domain
      cd00063
      Location:559 → 648
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:656 → 741
      fn3; Fibronectin type III domain
      pfam06583
      Location:1167 → 1470
      Neogenin_C; Neogenin C-terminus
      pfam07679
      Location:250 → 337
      I-set; Immunoglobulin I-set domain
      cd00096
      Location:252 → 255
      Ig; Ig strand A [structural motif]
      cd05722
      Location:52 → 148
      IgI_1_Neogenin_like; First immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cd05723
      Location:344 → 427
      IgI_4_Neogenin_like; Fourth immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cl11960
      Location:152 → 239
      Ig; Immunoglobulin domain

    10. XM_036456583.2 → XP_036312476.1  neogenin isoform X5

      UniProtKB/TrEMBL
      A0A7J8B3D1, A0A7J8B3T6
      Conserved Domains (9) summary
      smart00060
      Location:759 → 838
      FN3; Fibronectin type 3 domain
      cd00063
      Location:559 → 648
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:656 → 741
      fn3; Fibronectin type III domain
      pfam06583
      Location:1151 → 1454
      Neogenin_C; Neogenin C-terminus
      pfam07679
      Location:250 → 337
      I-set; Immunoglobulin I-set domain
      cd00096
      Location:252 → 255
      Ig; Ig strand A [structural motif]
      cd05722
      Location:52 → 148
      IgI_1_Neogenin_like; First immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cd05723
      Location:344 → 427
      IgI_4_Neogenin_like; Fourth immunoglobulin (Ig)-like domain in neogenin, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cl11960
      Location:152 → 239
      Ig; Immunoglobulin domain
    Nucleotide Protein
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