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    sox12 SRY-box transcription factor 12 [ Colossoma macropomum (tambaqui) ]

    Gene ID: 118799847, updated on 20-Mar-2024

    Summary

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    Gene symbol
    sox12
    Gene description
    SRY-box transcription factor 12
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Colossoma macropomum
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Colossoma
    Orthologs
    zebrafish all
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    Genomic context

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    See sox12 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    100 current Colossoma_macropomum (GCF_904425465.1) Unplaced Scaffold NW_023494810.1 (20307573..20310172)

    NW_023494810.1Genomic Context describing neighboring genes Neighboring gene chromosome unknown C20orf96 homolog Neighboring gene purine nucleoside phosphorylase 4a Neighboring gene tribbles pseudokinase 3 Neighboring gene MAF1 homolog, negative regulator of RNA polymerase III a

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_023494810 Unplaced Scaffold Reference Colossoma_macropomum

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anatomical structure morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor SOX-12

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Colossoma macropomum Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Colossoma_macropomum

    Genomic

    1. NW_023494810.1 Reference Colossoma_macropomum

      Range
      20307573..20310172
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036559921.1 → XP_036415814.1  transcription factor SOX-12

      Conserved Domains (1) summary
      cd01388
      Location:63 → 134
      SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    Nucleotide Protein
    Heading Accession and Version

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