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    ECU03_0360 U6 snRNA associated Sm-like protein [ Encephalitozoon cuniculi GB-M1 ]

    Gene ID: 858710, updated on 17-May-2024

    Summary

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    Gene symbol
    ECU03_0360
    Gene description
    U6 snRNA associated Sm-like protein
    Locus tag
    ECU03_0360
    See related
    MicrosporidiaDB:ECU03_0360; VEuPathDB:ECU03_0360
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Encephalitozoon cuniculi GB-M1 (isolate: GB-M1)
    Lineage
    Eukaryota; Fungi; Fungi incertae sedis; Microsporidia; Unikaryonidae; Encephalitozoon
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    Genomic context

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    See ECU03_0360 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    1
    Sequence:
    Chromosome: III; NC_003230.1 (44793..45059)

    Chromosome III - NC_003230.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003230.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of transcriptional signals in Encephalitozoon cuniculi widespread among Microsporidia phylum: support for accurate structural genome annotation. Peyretaillade E, et al. BMC Genomics, 2009 Dec 15. PMID 20003517, Free PMC Article
    2. Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi. Katinka MD, et al. Nature, 2001 Nov 22. PMID 11719806
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nuclear-transcribed mRNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spliceosomal snRNP assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U6 snRNA associated Sm-like protein
    NP_597548.1
    • 03_0360, U6 snRNA ASSOCIATED SM-LIKE PROTEIN (GLYCINE-RICH PROTEIN), LSM4-HUMAN

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003230.1 Reference assembly

      Range
      44793..45059
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001040912.1 → NP_597548.1  U6 snRNA associated Sm-like protein [Encephalitozoon cuniculi GB-M1]

      See identical proteins and their annotated locations for NP_597548.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      M1KA08, Q8SSB9
      Conserved Domains (1) summary
      cd01723
      Location:2 → 75
      LSm4; Like-Sm protein 4
    Nucleotide Protein
    Heading Accession and Version

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