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    LOC118897348 tumor necrosis factor receptor superfamily member 10A-like [ Balaenoptera musculus (blue whale) ]

    Gene ID: 118897348, updated on 16-Dec-2023

    Summary

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    Gene symbol
    LOC118897348
    Gene description
    tumor necrosis factor receptor superfamily member 10A-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Balaenoptera musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Mysticeti; Balaenopteridae; Balaenoptera
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    Genomic context

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    See LOC118897348 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    100 current mBalMus1.pri.v3 (GCF_009873245.2) 6 NC_045790.1 (15198092..15239476)

    Chromosome 6 - NC_045790.1Genomic Context describing neighboring genes Neighboring gene charged multivesicular body protein 7 Neighboring gene tumor necrosis factor receptor superfamily member 10A-like Neighboring gene Rho related BTB domain containing 2 Neighboring gene uncharacterized LOC118896999

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_045790.1 Chromosome 6 Reference mBalMus1.pri.v3 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables TRAIL binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in TRAIL-activated apoptotic signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell surface IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tumor necrosis factor receptor superfamily member 10A-like; tumor necrosis factor receptor superfamily member 10B-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Balaenoptera musculus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mBalMus1.pri.v3 Primary Assembly

    Genomic

    1. NC_045790.1 Reference mBalMus1.pri.v3 Primary Assembly

      Range
      15198092..15239476
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036856477.1 → XP_036712372.1  tumor necrosis factor receptor superfamily member 10A-like isoform X3

      UniProtKB/TrEMBL
      A0A8B8XR67
      Conserved Domains (3) summary
      cd08315
      Location:319 → 406
      Death_TRAILR_DR4_DR5; Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors
      cd00185
      Location:113 → 152
      TNFRSF; CRD3 [structural motif]
      cl22855
      Location:93 → 153
      TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)

    2. XM_036856475.1 → XP_036712370.1  tumor necrosis factor receptor superfamily member 10B-like isoform X1

      UniProtKB/TrEMBL
      A0A8B8XYL6
      Conserved Domains (2) summary
      cd08315
      Location:357 → 444
      Death_TRAILR_DR4_DR5; Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors
      cd10580
      Location:89 → 191
      TNFRSF10; Tumor necrosis factor receptor superfamily member 10 (TNFRSF10), includes TNFRSF10A (DR4), TNFRSF10B (DR5), TNFRSF10C (DcR1) and TNFRSF10D (DcR2)

    3. XM_036856476.1 → XP_036712371.1  tumor necrosis factor receptor superfamily member 10A-like isoform X2

      UniProtKB/TrEMBL
      A0A8B8XSA5
      Conserved Domains (3) summary
      PHA03201
      Location:4 → 89
      PHA03201; uracil DNA glycosylase; Provisional
      cd08315
      Location:328 → 415
      Death_TRAILR_DR4_DR5; Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors
      cd10580
      Location:89 → 191
      TNFRSF10; Tumor necrosis factor receptor superfamily member 10 (TNFRSF10), includes TNFRSF10A (DR4), TNFRSF10B (DR5), TNFRSF10C (DcR1) and TNFRSF10D (DcR2)
    Nucleotide Protein
    Heading Accession and Version

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