U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    SON SON DNA and RNA binding protein [ Manis javanica (Malayan pangolin) ]

    Gene ID: 108396824, updated on 14-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    SON
    Gene description
    SON DNA and RNA binding protein
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Manis javanica
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Pholidota; Manidae; Manis
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SON in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    101 current YNU_ManJav_2.0 (GCF_014570535.1) Unplaced Scaffold NW_023435993.1 (2449550..2482109)
    100 previous assembly ManJav1.0 (GCF_001685135.1) Unplaced Scaffold NW_016532901.1 (93340..124248)

    NW_023435993.1Genomic Context describing neighboring genes Neighboring gene DnaJ heat shock protein family (Hsp40) member C28 Neighboring gene U6 spliceosomal RNA Neighboring gene phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase Neighboring gene DNA replication fork stabilization factor DONSON Neighboring gene crystallin zeta like 1 Neighboring gene intersectin 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    protein SON
    Names
    SON DNA binding protein

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Manis javanica Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference YNU_ManJav_2.0 Primary Assembly

    Genomic

    1. NW_023435993.1 Reference YNU_ManJav_2.0 Primary Assembly

      Range
      2449550..2482109
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_037014674.1 → XP_036870569.1  protein SON isoform X2

      Conserved Domains (5) summary
      PHA03247
      Location:249 → 640
      PHA03247; large tegument protein UL36; Provisional
      PRK10811
      Location:1345 → 1641
      rne; ribonuclease E; Reviewed
      cd19870
      Location:2522 → 2572
      DSRM_SON-like; double-stranded RNA binding motif of protein SON and similar proteins
      pfam01585
      Location:2458 → 2502
      G-patch; G-patch domain
      NF033609
      Location:725 → 1020
      MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA

    2. XM_037014673.1 → XP_036870568.1  protein SON isoform X1

      Conserved Domains (5) summary
      PHA03247
      Location:249 → 640
      PHA03247; large tegument protein UL36; Provisional
      PRK10811
      Location:1345 → 1641
      rne; ribonuclease E; Reviewed
      cd19870
      Location:2522 → 2596
      DSRM_SON-like; double-stranded RNA binding motif of protein SON and similar proteins
      pfam01585
      Location:2458 → 2502
      G-patch; G-patch domain
      NF033609
      Location:725 → 1020
      MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA

    3. XM_037014676.1 → XP_036870571.1  protein SON isoform X3

      Conserved Domains (3) summary
      PHA03247
      Location:249 → 640
      PHA03247; large tegument protein UL36; Provisional
      PRK10811
      Location:1345 → 1641
      rne; ribonuclease E; Reviewed
      NF033609
      Location:725 → 1020
      MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA

    4. XM_037014677.1 → XP_036870572.1  protein SON isoform X4

      Conserved Domains (3) summary
      PHA03247
      Location:249 → 640
      PHA03247; large tegument protein UL36; Provisional
      PRK10811
      Location:1345 → 1641
      rne; ribonuclease E; Reviewed
      NF033609
      Location:725 → 1020
      MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA

    RNA

    1. XR_005060334.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.