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    EndoB SH3 domain containing GRB2 like, endophilin-B [ Rhipicephalus microplus (southern cattle tick) ]

    Gene ID: 119187859, updated on 5-Oct-2024

    Summary

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    Gene symbol
    EndoB
    Gene description
    SH3 domain containing GRB2 like, endophilin-B
    See related
    VectorBase:LOC119187859; EnsemblRapid:LOC119187859
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rhipicephalus microplus
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Rhipicephalinae; Rhipicephalus; Boophilus
    Orthologs
    fruit fly all
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    Genomic context

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    See EndoB in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current ASM1333972v1 (GCF_013339725.1) Unplaced Scaffold NW_023613950.1 (3091996..3125253, complement)

    NW_023613950.1Genomic Context describing neighboring genes Neighboring gene glutamine synthetase-like Neighboring gene ATP-binding cassette sub-family A member 2-like Neighboring gene uncharacterized LOC119187841 Neighboring gene centrosomin-like Neighboring gene uncharacterized LOC119187876 Neighboring gene transfer RNA methionine (anticodon CAU)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_023613950 Unplaced Scaffold Reference ASM1333972v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in membrane organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    endophilin-B1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Rhipicephalus microplus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1333972v1 Primary Assembly

    Genomic

    1. NW_023613950.1 Reference ASM1333972v1 Primary Assembly

      Range
      3091996..3125253 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_037435956.1 → XP_037291853.1  endophilin-B1-like isoform X1

      UniProtKB/TrEMBL
      A0A6M2CM82
      Related
      XP_037291853.1, XM_037435956.1
      Conserved Domains (2) summary
      cd07594
      Location:24 → 264
      BAR_Endophilin_B; The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B
      cd11802
      Location:312 → 363
      SH3_Endophilin_B; Src homology 3 domain of Endophilin-B

    2. XM_037435958.1 → XP_037291855.1  endophilin-B1-like isoform X3

      Related
      XP_037291855.1, XM_037435958.1
      Conserved Domains (1) summary
      cd07594
      Location:24 → 264
      BAR_Endophilin_B; The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B

    3. XM_037435953.1 → XP_037291850.1  endophilin-B1-like isoform X1

      UniProtKB/TrEMBL
      A0A6M2CM82
      Related
      XP_037291850.1, XM_037435953.1
      Conserved Domains (2) summary
      cd07594
      Location:24 → 264
      BAR_Endophilin_B; The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B
      cd11802
      Location:312 → 363
      SH3_Endophilin_B; Src homology 3 domain of Endophilin-B

    4. XM_037435957.1 → XP_037291854.1  endophilin-B1-like isoform X2

      UniProtKB/TrEMBL
      A0A6M2CMW5
      Related
      XP_037291854.1, XM_037435957.1
      Conserved Domains (2) summary
      cd07594
      Location:24 → 249
      BAR_Endophilin_B; The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B
      cd11802
      Location:297 → 348
      SH3_Endophilin_B; Src homology 3 domain of Endophilin-B

    5. XM_037435955.1 → XP_037291852.1  endophilin-B1-like isoform X1

      UniProtKB/TrEMBL
      A0A6M2CM82
      Related
      XP_037291852.1, XM_037435955.1
      Conserved Domains (2) summary
      cd07594
      Location:24 → 264
      BAR_Endophilin_B; The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B
      cd11802
      Location:312 → 363
      SH3_Endophilin_B; Src homology 3 domain of Endophilin-B
    Nucleotide Protein
    Heading Accession and Version

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