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    LOC119160172 transcription factor SOX-21-like [ Rhipicephalus microplus (southern cattle tick) ]

    Gene ID: 119160172, updated on 26-Mar-2024

    Summary

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    Gene symbol
    LOC119160172
    Gene description
    transcription factor SOX-21-like
    See related
    VectorBase:LOC119160172; EnsemblRapid:LOC119160172
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rhipicephalus microplus
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Rhipicephalinae; Rhipicephalus; Boophilus
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    Genomic context

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    See LOC119160172 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    100 current ASM1333972v1 (GCF_013339725.1) 1 NC_051165.1 (317489982..317500543)

    Chromosome 1 - NC_051165.1Genomic Context describing neighboring genes Neighboring gene putative glutamate--tRNA ligase, mitochondrial Neighboring gene cryptochrome-1-like Neighboring gene Rho-type guanine nucleotide exchange factor Neighboring gene divergent protein kinase domain 2A-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_051165.1 Chromosome 1 Reference ASM1333972v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anatomical structure morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor SOX-21-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Rhipicephalus microplus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1333972v1 Primary Assembly

    Genomic

    1. NC_051165.1 Reference ASM1333972v1 Primary Assembly

      Range
      317489982..317500543
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_037412878.1 → XP_037268775.1  transcription factor SOX-21-like

      UniProtKB/TrEMBL
      A0A9J6EXN7
      Related
      XP_037268775.1, XM_037412878.1
      Conserved Domains (1) summary
      cd01388
      Location:1 → 67
      SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    Nucleotide Protein
    Heading Accession and Version

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